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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS23900 and PFLU_RS23905 are separated by 12 nucleotides
PFLU_RS23905 and PFLU_RS23910 are separated by 0 nucleotides
PFLU_RS23910 and PFLU_RS23915 are separated by 13 nucleotides
PFLU_RS23915 and PFLU_RS23920 are separated by 87 nucleotides
PFLU_RS23900: PFLU_RS23900 - SMC-Scp complex subunit ScpB, at 5,356,011 to 5,356,943
_RS23900
PFLU_RS23905: PFLU_RS23905 - segregation/condensation protein A, at 5,356,956 to 5,357,774
_RS23905
PFLU_RS23910: PFLU_RS23910 - threonylcarbamoyl-AMP synthase, at 5,357,775 to 5,358,404
_RS23910
PFLU_RS23915: PFLU_RS23915 - PHP domain-containing protein, at 5,358,418 to 5,359,281
_RS23915
PFLU_RS23920: PFLU_RS23920 - septation protein A, at 5,359,369 to 5,359,965
_RS23920
Group
Condition
PFLU
_RS23900
PFLU
_RS23905
PFLU
_RS23910
PFLU
_RS23915
PFLU
_RS23920
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-1.6
-0.3
-2.2
-0.9
-5.3
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.6
-0.5
-0.8
-1.1
-4.2
nitrogen source
nitrate (N); with MOPS
-1.0
+0.4
+0.1
-1.1
-5.4
carbon source
L-Arabinose (C)
-0.3
-0.4
-0.1
+0.1
-5.6
carbon and nitrogen source
NAG carbon and (N)
-0.1
-0.3
-0.0
-0.3
-5.6
carbon source
propionate 20 mM (C)
-0.7
-0.5
-1.1
-0.9
-2.8
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with PEG
-0.2
-0.1
-0.0
-0.5
-5.3
carbon and nitrogen source
NAG carbon and (N); with MOPS
-0.1
+0.0
-0.2
+0.0
-5.7
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-0.2
-0.2
-0.4
-0.2
-4.8
stress
malate (C) and Ammonium chloride (N); with TAPS
-0.3
-0.3
-0.3
-0.2
-4.6
nitrogen source
NAG (N); with MOPS
-0.5
+0.1
+0.3
+0.0
-5.7
carbon source
propionate 20 mM (C)
+0.1
-0.4
-1.5
-1.1
-2.6
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.1
+0.1
+0.1
-0.7
-5.1
carbon source
acetate (C)
+0.3
+0.4
-0.3
-0.2
-5.6
no stress control
Ferulic (C) and Ammonium chloride (N); with MOPS
+0.2
+0.1
-0.2
-0.7
-4.7
carbon source
NAG (C)
-0.1
+0.3
-0.8
-0.1
-4.5
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.1
+0.2
+0.1
-5.6
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
+0.0
-0.3
-0.5
-4.6
nitrogen source
nitrate (N); with MOPS
+0.1
+0.3
+0.2
-0.1
-5.6
carbon source
acetate (C)
+0.2
+0.2
+0.3
-0.2
-5.6
carbon and nitrogen source
NAG carbon and (N)
+0.3
+0.0
+0.1
-0.1
-5.5
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
+0.2
+0.2
-0.4
-0.4
-4.7
carbon source
NAG (C)
+0.1
-0.1
+0.1
+0.2
-5.3
pH
Growth at pH7 and (C) D-Glucose
+0.7
+0.1
-0.6
+0.2
-5.2
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.1
-0.4
+0.4
-4.8
pH
Growth at pH9 and (C) Trisodium citrate
+0.2
+0.5
-0.0
-0.4
-5.0
no stress control
Glycine betaine (C)(N); with MOPS
+0.6
+0.1
-0.1
-0.5
-4.5
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.5
+0.2
-1.4
-0.6
-2.9
stress
Betaine (C)(N); with MOPS; with chloride
+0.5
+0.3
-0.3
-0.5
-4.3
pH
Growth at pH8 and (C) Trisodium citrate
+0.7
+0.2
+0.7
+0.7
-5.0
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