Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS23805 and PFLU_RS23810 are separated by 152 nucleotidesPFLU_RS23810 and PFLU_RS23815 are separated by 207 nucleotidesPFLU_RS23815 and PFLU_RS23820 are separated by 184 nucleotidesPFLU_RS23820 and PFLU_RS23825 are separated by 134 nucleotides PFLU_RS23805: PFLU_RS23805 - superoxide dismutase, at 5,333,044 to 5,333,640 _RS23805 PFLU_RS23810: PFLU_RS23810 - hypothetical protein, at 5,333,793 to 5,333,981 _RS23810 PFLU_RS23815: PFLU_RS23815 - GGDEF and EAL domain-containing protein, at 5,334,189 to 5,336,240 _RS23815 PFLU_RS23820: PFLU_RS23820 - peptidase, at 5,336,425 to 5,337,768 _RS23820 PFLU_RS23825: PFLU_RS23825 - hypothetical protein, at 5,337,903 to 5,342,081 _RS23825
Group Condition PFLU_RS23805 PFLU_RS23810 PFLU_RS23815 PFLU_RS23820 PFLU_RS23825
no stress control Glucose (C) and Glycine betaine (N); with MOPS N.D. -0.6 -2.7 -0.0 +0.0
carbon source NAG (C) N.D. -1.2 -1.3 -0.6 -0.0
carbon source caffeic 2 mM (C) N.D. -2.9 -0.4 +0.2 +0.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) N.D. -2.3 -0.6 +0.0 -0.1
carbon source NAG (C) N.D. -0.8 -1.4 -0.7 -0.1
no stress control Glucose (C) and Glycine betaine (N); with TAPS N.D. -0.0 -2.8 +0.0 -0.0
no stress control Glucose (C) and Glycine betaine (N); with MOPS N.D. -0.4 -2.3 +0.1 -0.1
no stress control Glucose (C) and nitrate (N); with MOPS N.D. -0.3 -2.4 +0.1 +0.0
carbon source NAG (C) N.D. -0.5 -1.4 -0.6 -0.1
no stress control Glucose (C) and Glycine betaine (N); with TAPS N.D. -0.2 -2.3 -0.1 +0.0
no stress control Glucose (C) and Ammonium chloride (N); with TAPS N.D. -0.9 -1.7 +0.1 +0.0
no stress control Sucrose (C) and Glycine betaine (N); with TAPS N.D. -0.5 -1.2 -0.8 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -3.0 +0.5 +0.1 -0.1
no stress control Sucrose (C) and Glycine betaine (N); with TAPS N.D. +0.2 -1.7 -0.9 -0.0
no stress control Glucose (C) and nitrate (N); with MOPS N.D. +0.2 -2.8 +0.2 +0.0
no stress control Glucose (C) and nitrate (N); with MOPS N.D. -0.4 -2.4 +0.3 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG N.D. -0.5 -0.3 -1.5 +0.0
no stress control Glucose (C) and Glycine betaine (N); with TAPS N.D. +0.0 -2.2 -0.0 +0.0
carbon source 4-Guanidinobutyric (C) N.D. -1.9 -0.2 -0.2 +0.1
no stress control Glucose (C) and nitrate (N); with MOPS N.D. +0.8 -2.6 -0.2 -0.0
no stress control Glucose (C) and Glycine betaine (N); with MOPS N.D. +0.3 -2.2 -0.1 -0.0
no stress control Glucose (C) and Betaine (N); with TAPS N.D. -1.3 +0.2 -0.9 +0.0
carbon source sn-glycero-3-phosphocholine 10 mM (C) N.D. -0.1 -1.9 +0.3 -0.1
carbon and nitrogen source NAG carbon and (N) N.D. +0.7 -1.6 -0.9 -0.0
carbon source sn-glycero-3-phosphocholine 10 mM (C) N.D. +0.2 -2.2 +0.3 +0.1
carbon and nitrogen source NAG carbon and (N) N.D. +0.4 -1.4 -0.6 +0.0
carbon source sn-glycero-3-phosphocholine (C) N.D. -0.6 -1.3 +0.6 -0.1
carbon and nitrogen source NAG carbon and (N); with MOPS N.D. +0.6 -1.4 -0.3 +0.1
carbon source acetate 30 mM (C) N.D. -0.3 +0.7 -1.2 -0.0
stress Sucrose (C) and Glycine betaine (N); with TAPS; with PEG N.D. -0.8 +1.0 -0.4 -0.1
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