Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS23435 and PFLU_RS23440 are separated by 263 nucleotidesPFLU_RS23440 and PFLU_RS23445 are separated by 76 nucleotidesPFLU_RS23445 and PFLU_RS23450 overlap by 4 nucleotidesPFLU_RS23450 and PFLU_RS23455 are separated by 71 nucleotides PFLU_RS23435: PFLU_RS23435 - diguanylate cyclase, at 5,263,918 to 5,264,976 _RS23435 PFLU_RS23440: PFLU_RS23440 - methyl-accepting chemotaxis protein, at 5,265,240 to 5,266,559 _RS23440 PFLU_RS23445: PFLU_RS23445 - DUF1003 domain-containing protein, at 5,266,636 to 5,267,154 _RS23445 PFLU_RS23450: PFLU_RS23450 - LysR family transcriptional regulator, at 5,267,151 to 5,268,029 _RS23450 PFLU_RS23455: PFLU_RS23455 - CTP synthase, at 5,268,101 to 5,268,811 _RS23455
Group Condition PFLU_RS23435 PFLU_RS23440 PFLU_RS23445 PFLU_RS23450 PFLU_RS23455
nitrogen source NAG (N); with MOPS +0.4 +0.3 -4.7 -0.1 -0.1
nitrogen source nitrate (N); with MOPS +0.1 -0.1 -3.5 +0.2 -0.6
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.0 +0.0 -3.3 -0.2 +0.3
nitrogen source NAG (N); with MOPS -0.1 +0.1 -1.9 -0.0 -0.7
carbon source p-Coumaric 2 mM (C) +0.4 -0.0 -1.1 +0.2 -1.9
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.2 -1.7 -0.4 -0.5
pH Growth at pH9 and (C) D-Glucose -0.2 +0.2 -2.2 +0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.2 -2.2 -0.2 +0.3
carbon source NAG (C) +0.3 -0.4 -1.8 +0.5 -0.8
nitrogen source nitrate (N); with MOPS +0.2 -0.0 -2.8 +0.4 +0.1
carbon source p-Coumaric 2 mM (C) +0.0 +0.1 -2.0 -0.2 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.1 -1.4 -0.5 -0.4
carbon source succinate (C); with MOPS +0.1 -0.0 -2.0 +0.4 -0.2
carbon source pyruvate 20 mM (C) -0.0 +0.1 -1.7 -0.3 +0.3
carbon source Xanthosine (C) -0.3 +0.3 -0.8 +0.0 -1.0
pH Growth at pH9 and (C) Trisodium citrate -0.2 +0.4 -2.0 +0.1 +0.3
carbon source Phloretic Acid 2 mM (C) +0.2 +0.1 -1.1 -0.9 +0.4
carbon source Inosine (C) -0.4 -0.1 -0.4 +0.7 -1.0
carbon source Cytidine 10 mM (C) +0.2 +0.2 -1.8 +0.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.1 -0.5 +0.7 -1.1
pH Growth at pH9 and (C) Trisodium citrate +0.1 -0.6 -1.2 +0.9 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.4 -1.1 +0.3 -0.4
carbon source L-Valine 10 mM (C) +0.1 -0.1 +0.8 -0.6 -0.7
carbon source Phloretic Acid 2 mM (C) -0.5 -0.2 +1.0 -0.7 -0.2
carbon source 4-Aminobutyric (C) -0.2 +0.1 +1.6 -0.5 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.2 -1.1 +0.2 +0.7
carbon source 4-Guanidinobutyric (C) +0.4 +0.2 -1.2 +0.8 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.3 +0.7 -0.4 +0.4
no stress control L-Glutamine (C)(N); with MOPS -0.1 +0.1 +1.5 +0.5 -0.1
carbon source L-Carnitine (C) -0.3 +0.1 +1.6 +0.2 +0.6
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