Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS22985 and PFLU_RS22990 are separated by 136 nucleotidesPFLU_RS22990 and PFLU_RS22995 overlap by 4 nucleotidesPFLU_RS22995 and PFLU_RS23000 are separated by 70 nucleotidesPFLU_RS23000 and PFLU_RS23005 are separated by 16 nucleotides PFLU_RS22985: PFLU_RS22985 - allantoin permease, at 5,167,683 to 5,169,149 _RS22985 PFLU_RS22990: PFLU_RS22990 - ADP-ribosylglycohydrolase, at 5,169,286 to 5,170,287 _RS22990 PFLU_RS22995: PFLU_RS22995 - GntR family transcriptional regulator, at 5,170,284 to 5,170,997 _RS22995 PFLU_RS23000: PFLU_RS23000 - DUF1285 domain-containing protein, at 5,171,068 to 5,171,628 _RS23000 PFLU_RS23005: PFLU_RS23005 - DUF4823 domain-containing protein, at 5,171,645 to 5,172,250 _RS23005
Group Condition PFLU_RS22985 PFLU_RS22990 PFLU_RS22995 PFLU_RS23000 PFLU_RS23005
carbon source L-Valine 10 mM (C) -0.0 -3.2 -0.5 -1.0 -0.2
carbon source Phloretic Acid 2 mM (C) -0.4 -1.7 -0.3 -0.8 -0.9
carbon source L-Valine 10 mM (C) -0.0 -2.1 -0.3 -1.0 -0.4
carbon source Phloretic Acid 2 mM (C) +0.1 -0.9 -0.5 -1.3 -1.2
carbon source Phloretic Acid 2 mM (C) +0.2 -1.6 +0.3 -1.2 -1.0
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.3 -2.1 -0.0 -0.1 -0.5
carbon source 4-Guanidinobutyric (C) +0.2 -1.9 -0.2 -0.4 -0.6
carbon source propionate 20 mM (C) -0.1 -1.6 -0.3 -0.1 -0.5
carbon source L-Valine 10 mM (C) +0.0 -0.9 -0.5 -1.0 -0.4
carbon source D-Xylose 10 mM (C) -0.2 -2.3 +0.2 +0.2 -0.4
carbon source propionate 20 mM (C) +0.3 -1.5 -0.1 -0.5 -0.4
carbon source Trisodium citrate 10 mM (C) -0.0 -1.5 +0.1 +0.0 -0.7
carbon source Inosine 10 mM (C) +0.1 -1.4 +0.1 -0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -2.0 -0.7 +0.0 +0.4
carbon source Sucrose 5 mM (C) -0.1 -1.8 -0.3 +0.3 -0.1
carbon source Ferulic Acid 2 mM (C) +0.1 -2.1 +0.3 +0.2 -0.5
carbon source Xanthosine (C) -0.2 -0.3 -0.4 +0.6 -1.6
carbon source D,L-Malic Acid (C) +0.3 -1.1 -0.3 +0.1 -1.0
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.2 -1.7 -0.3 +0.1 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.0 -2.0 +0.2 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.2 -1.4 +0.3 -0.0 -0.3
carbon source L-Valine (C) -0.6 -0.3 -0.5 -0.6 +0.5
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.1 -1.7 +0.2 +0.4 +0.1
no stress control Glycine betaine (C)(N); with MOPS -0.4 -1.0 +0.6 +0.3 -0.3
no stress control Glycine betaine (C)(N); with TAPS +0.2 -1.2 +0.6 -0.3 +0.1
nitrogen source NAG (N); with MOPS -0.0 -1.6 +0.4 -0.1 +0.7
carbon source Xanthosine (C) +0.3 +0.7 -0.2 +0.1 -1.5
carbon source acetate (C) +0.0 -0.9 +0.1 -0.2 +1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 -0.9 +0.3 +0.2 +0.7
carbon and nitrogen source NAG carbon and (N) +0.4 +0.3 -0.3 -0.5 +1.2
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