Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS22775 and PFLU_RS22780 are separated by 83 nucleotidesPFLU_RS22780 and PFLU_RS22785 are separated by 235 nucleotidesPFLU_RS22785 and PFLU_RS22790 are separated by 110 nucleotidesPFLU_RS22790 and PFLU_RS22795 are separated by 260 nucleotides PFLU_RS22775: PFLU_RS22775 - DUF4337 domain-containing protein, at 5,126,612 to 5,127,190 _RS22775 PFLU_RS22780: PFLU_RS22780 - hypothetical protein, at 5,127,274 to 5,127,642 _RS22780 PFLU_RS22785: PFLU_RS22785 - DMT family transporter, at 5,127,878 to 5,128,918 _RS22785 PFLU_RS22790: PFLU_RS22790 - choline ABC transporter substrate-binding protein, at 5,129,029 to 5,129,964 _RS22790 PFLU_RS22795: PFLU_RS22795 - HD domain-containing protein, at 5,130,225 to 5,130,836 _RS22795
Group Condition PFLU_RS22775 PFLU_RS22780 PFLU_RS22785 PFLU_RS22790 PFLU_RS22795
pH Growth at pH8 and (C) D-Glucose -0.8 -0.0 -0.4 +0.1 -0.2
carbon source D-Mannitol (C) +0.0 -0.3 -0.7 -0.2 -0.0
carbon source D-Mannitol (C) -0.1 -0.3 -0.9 -0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.3 -0.2 -0.8 +0.1 +0.0
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.1 -0.8 +0.0 +0.1
no stress control L-Glutamine (C)(N); with TAPS -0.6 -0.8 +0.1 +0.2 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -0.4 -0.4 -0.2 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.7 -0.1 +0.0 +0.2
pH Growth at pH9 and (C) D-Glucose -0.2 -0.2 -0.5 +0.3 -0.1
carbon source L-Lysine (C) +0.3 -0.0 -0.6 -0.2 -0.1
carbon source Choline chloride 10 mM (C) -0.1 +0.3 -0.4 -0.2 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.5 -1.0 +0.1 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.2 -0.4 -0.2 +0.2
carbon source L-Valine 10 mM (C) +0.4 -0.4 -0.8 +0.4 +0.0
stress Betaine (C)(N); with TAPS; with chloride -0.7 -0.0 -0.2 +0.2 +0.3
carbon source L-Valine (C) +0.3 +0.3 -0.9 +0.0 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 +0.2 -0.5 +0.1 -0.3
carbon source acetate 30 mM (C) +0.2 -0.5 -0.2 +0.4 +0.1
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.3 +0.3 -0.7 +0.0 -0.1
carbon source L-Valine 10 mM (C) +0.2 +0.5 -1.3 +0.3 +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.6 +0.2 -0.4 -0.0 -0.3
temperature Growth at 25C +0.1 -0.4 +0.4 -0.3 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.4 +0.2 -0.0 +0.2
nitrogen source NAG (N); with MOPS +0.5 -0.6 +0.2 -0.1 +0.3
carbon source Phloretic Acid 2 mM (C) +0.1 +0.3 +0.5 -0.5 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.2 +0.7 -0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.3 -0.2 +0.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 +0.6 -0.1 -0.3 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.4 -0.1 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 +0.5 +0.2 +0.3 -0.0
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