Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS22585 and PFLU_RS22590 are separated by 26 nucleotidesPFLU_RS22590 and PFLU_RS22595 are separated by 60 nucleotidesPFLU_RS22595 and PFLU_RS22600 are separated by 107 nucleotidesPFLU_RS22600 and PFLU_RS22605 are separated by 87 nucleotides PFLU_RS22585: PFLU_RS22585 - bifunctional protein-serine/threonine kinase/phosphatase, at 5,085,067 to 5,086,737 _RS22585 PFLU_RS22590: PFLU_RS22590 - uroporphyrinogen-III C-methyltransferase, at 5,086,764 to 5,087,507 _RS22590 PFLU_RS22595: PFLU_RS22595 - OmpA family protein, at 5,087,568 to 5,088,548 _RS22595 PFLU_RS22600: PFLU_RS22600 - RNA polymerase sigma factor SigX, at 5,088,656 to 5,089,246 _RS22600 PFLU_RS22605: PFLU_RS22605 - mechanosensitive ion channel, at 5,089,334 to 5,090,158 _RS22605
Group Condition PFLU_RS22585 PFLU_RS22590 PFLU_RS22595 PFLU_RS22600 PFLU_RS22605
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.1 -3.4 -3.5 -0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.2 -3.3 -4.1 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.3 -3.4 -3.4 -0.5
nitrogen source nitrate (N); with MOPS -0.5 -0.8 -3.4 -1.1 -1.0
nitrogen source NAG (N); with MOPS -0.6 -1.0 -3.3 -0.8 -0.8
carbon source Trisodium citrate (C) +0.0 -0.1 -3.8 -1.6 -1.0
pH Growth at pH6 and (C) Trisodium citrate -0.0 -0.1 -3.8 -1.5 -1.0
pH Growth at pH7 and (C) Trisodium citrate -0.0 -0.0 -3.6 -1.7 -1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.2 -3.3 -2.3 -1.1
carbon source Trisodium citrate (C) -0.0 -0.3 -3.6 -1.3 -1.0
carbon source Trisodium citrate (C); with MOPS +0.1 -0.1 -3.7 -1.2 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 -0.1 -2.3 -1.9 -1.9
pH Growth at pH8 and (C) Trisodium citrate -0.0 -0.1 -3.2 -1.4 -1.4
carbon source Betaine 10 mM (C) +0.0 +0.1 -0.1 -4.8 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -0.2 -2.9 -2.1 -0.9
nitrogen source nitrite (N) -0.3 -0.5 -3.8 +1.6 -0.6
nitrogen source nitrite (N) -0.3 -0.5 -3.3 +1.6 -0.6
nitrogen source no extra (N); with MOPS -0.5 -0.8 -2.6 +1.8 -0.9
carbon source NAG (C); with MOPS +0.1 -0.2 -3.7 +2.0 -0.5
pH Growth at pH9 and (C) D-Glucose -0.3 -0.3 -3.2 +3.5 -0.4
carbon and nitrogen source NAG carbon and (N) +0.2 -0.3 -3.1 +2.5 +0.0
carbon and nitrogen source NAG carbon and (N) +0.0 +0.2 -3.4 +2.6 -0.0
carbon and nitrogen source NAG carbon and (N) -0.2 -0.1 -3.3 +3.9 -0.5
pH Growth at pH8 and (C) Trisodium citrate -0.2 +0.5 -2.6 +2.8 -0.5
carbon source NAG (C) +0.1 -0.3 -3.1 +3.2 +0.5
carbon source NAG (C) -0.0 +0.3 -3.1 +3.7 +0.1
carbon source NAG (C) +0.2 -0.6 -3.2 +4.7 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 -0.2 +0.3 +4.6 -1.1
carbon source Ferulic Acid (C) 1.5 mM -0.0 -0.3 +3.3 +1.2 +2.1
carbon source Ferulic Acid (C) 1.5 mM -0.0 +0.2 +3.3 +2.0 +1.4
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