Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS22510 and PFLU_RS22515 are separated by 7 nucleotidesPFLU_RS22515 and PFLU_RS22520 are separated by 126 nucleotidesPFLU_RS22520 and PFLU_RS22525 are separated by 226 nucleotidesPFLU_RS22525 and PFLU_RS22530 are separated by 36 nucleotides PFLU_RS22510: PFLU_RS22510 - xanthine dehydrogenase accessory protein XdhC, at 5,065,478 to 5,066,335 _RS22510 PFLU_RS22515: PFLU_RS22515 - guanine deaminase, at 5,066,343 to 5,067,647 _RS22515 PFLU_RS22520: PFLU_RS22520 - GntR family transcriptional regulator, at 5,067,774 to 5,068,538 _RS22520 PFLU_RS22525: PFLU_RS22525 - benzoate/H(+) symporter BenE family transporter, at 5,068,765 to 5,069,955 _RS22525 PFLU_RS22530: PFLU_RS22530 - DUF469 domain-containing protein, at 5,069,992 to 5,070,336 _RS22530
Group Condition PFLU_RS22510 PFLU_RS22515 PFLU_RS22520 PFLU_RS22525 PFLU_RS22530
carbon source Guanosine 10 mM (C) -3.3 -3.2 -1.5 +0.2 +0.3
carbon source Guanosine 10 mM (C) -2.9 -3.4 -0.5 +0.1 +0.2
carbon source Guanosine 10 mM (C) -2.8 -3.2 -0.3 +0.0 +0.3
carbon source propionate 20 mM (C) -0.3 +0.1 -5.2 +0.2 -0.1
carbon source p-Coumaric (C) 5 mM -0.2 -0.1 -2.7 -0.1 -1.5
carbon source p-Coumaric (C) 5 mM -0.1 -0.2 -2.6 -0.4 -1.2
carbon source Phloretic Acid 2 mM (C) -0.5 -0.2 -3.0 -0.2 -0.7
carbon source Phloretic Acid 2 mM (C) +0.3 +0.2 -4.1 +0.2 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 -0.4 -2.0 +0.2 -2.1
carbon source propionate 20 mM (C) -0.0 +0.3 -4.7 +0.3 -0.3
carbon source Inosine 10 mM (C) -3.3 -0.1 -1.2 +0.1 +0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.0 -0.2 -2.4 -0.1 -1.6
carbon source Inosine 10 mM (C) -2.3 -0.1 -1.8 +0.2 -0.1
carbon source Phloretic Acid 2 mM (C) -0.1 -0.1 -3.9 -0.2 +0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.1 -3.6 +0.4 -0.2
no stress control L-Glutamine (C)(N); with MOPS +0.0 +0.1 -3.5 +0.1 -0.6
carbon source NAG (C) -0.1 +0.1 -3.4 +0.1 -0.5
carbon source Choline chloride 10 mM (C) -0.2 +0.0 -3.2 +0.2 -0.5
carbon source Cytidine 10 mM (C) +0.2 +0.1 -3.5 -0.1 -0.1
carbon source pyruvate 20 mM (C) +0.3 +0.2 -3.5 +0.1 -0.3
stress L-Glutamine (C)(N); with TAPS; with chloride -0.3 -0.2 -3.4 +0.0 +0.7
carbon source Inosine 10 mM (C) -2.3 -0.0 -1.5 +0.2 +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 +0.5 -2.9 +0.3 -0.6
carbon source L-Ornithine 10 mM (C) +0.0 +0.4 -3.4 +0.1 +0.2
carbon source L-Ornithine 10 mM (C) +0.2 +0.2 -3.4 +0.2 +0.4
carbon source Xanthosine (C) -2.4 -0.8 +2.2 +0.2 -0.3
carbon source Xanthosine (C) -2.6 -0.8 +1.5 +0.3 +0.7
carbon source Inosine (C) -2.6 -0.4 +3.1 -0.2 -0.9
carbon source Inosine (C) -3.0 -1.2 +3.6 -0.0 +0.3
carbon source Xanthosine (C) -2.1 -0.6 +2.0 +0.3 +0.3
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