Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS22345 and PFLU_RS22350 are separated by 6 nucleotidesPFLU_RS22350 and PFLU_RS22355 overlap by 4 nucleotidesPFLU_RS22355 and PFLU_RS22360 are separated by 338 nucleotidesPFLU_RS22360 and PFLU_RS22365 are separated by 21 nucleotides PFLU_RS22345: PFLU_RS22345 - cytochrome-c oxidase, cbb3-type subunit II, at 5,026,028 to 5,026,636 _RS22345 PFLU_RS22350: PFLU_RS22350 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 5,026,643 to 5,026,828 _RS22350 PFLU_RS22355: PFLU_RS22355 - cytochrome-c oxidase, cbb3-type subunit III, at 5,026,825 to 5,027,802 _RS22355 PFLU_RS22360: PFLU_RS22360 - cytochrome c oxidase accessory protein CcoG, at 5,028,141 to 5,029,568 _RS22360 PFLU_RS22365: PFLU_RS22365 - membrane protein, at 5,029,590 to 5,030,129 _RS22365
Group Condition PFLU_RS22345 PFLU_RS22350 PFLU_RS22355 PFLU_RS22360 PFLU_RS22365
carbon source Xanthosine (C) -0.7 N.D. -2.6 -2.6 -1.6
carbon source Xanthosine (C) -1.7 N.D. -2.1 -2.8 -0.6
carbon source Xanthosine (C) -1.3 N.D. -1.7 -2.3 -0.8
carbon source Inosine (C) -1.5 N.D. -1.9 -1.7 -0.7
carbon source Inosine (C) -1.6 N.D. -1.6 -1.9 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.5 N.D. -0.6 -1.4 -1.1
carbon source 4-Aminobutyric (C) -0.6 N.D. -1.2 -1.4 -1.1
carbon source D-Glucose (C) -0.8 N.D. -1.0 -1.5 -0.7
carbon source Guanosine 10 mM (C) -1.2 N.D. -0.6 -1.8 -0.3
carbon source Xanthosine 10 mM (C) -0.9 N.D. -1.3 -1.5 -0.2
carbon source D-Glucose (C) -0.8 N.D. -1.0 -1.4 -0.6
carbon source Guanosine 10 mM (C) -1.3 N.D. -0.5 -1.9 +0.1
carbon source 4-Aminobutyric (C) -0.9 N.D. -1.1 -1.5 -0.1
carbon source 4-Guanidinobutyric (C) +0.0 N.D. -0.9 -1.0 -1.5
carbon source Xanthosine 10 mM (C) -0.7 N.D. -0.7 -1.4 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 N.D. -0.7 -1.2 -0.9
carbon source Xanthosine 10 mM (C) -0.7 N.D. -0.9 -1.8 +0.1
carbon source Guanosine 10 mM (C) -0.8 N.D. -0.7 -1.7 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 N.D. -0.4 -0.9 -0.8
carbon source Inosine 10 mM (C) -0.4 N.D. -1.0 -1.6 -0.1
carbon source sn-glycero-3-phosphocholine (C) -0.4 N.D. -0.7 -1.3 -0.7
carbon source sn-glycero-3-phosphocholine (C) -0.4 N.D. -0.7 -1.3 -0.7
carbon source NAG (C) -0.4 N.D. -0.0 -0.7 -1.9
carbon source propionate (C) -0.6 N.D. -0.0 -1.5 -1.0
carbon source acetate (C) -0.2 N.D. -0.1 -0.4 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 N.D. +0.1 -1.4 -1.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 N.D. +0.1 -1.1 -1.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 N.D. -0.4 +1.5 +0.9
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 N.D. +0.2 +1.6 +1.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 N.D. -0.2 +1.6 +1.2
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