Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS31775 and PFLU_RS22260 overlap by 37 nucleotidesPFLU_RS22260 and PFLU_RS22265 are separated by 308 nucleotidesPFLU_RS22265 and PFLU_RS22270 are separated by 371 nucleotidesPFLU_RS22270 and PFLU_RS22280 are separated by 23 nucleotides PFLU_RS31775: PFLU_RS31775 - hypothetical protein, at 5,003,970 to 5,004,152 _RS31775 PFLU_RS22260: PFLU_RS22260 - beta-ketoacyl-ACP synthase III, at 5,004,116 to 5,005,237 _RS22260 PFLU_RS22265: PFLU_RS22265 - ATP-dependent RNA helicase HrpA, at 5,005,546 to 5,009,457 _RS22265 PFLU_RS22270: PFLU_RS22270 - hypothetical protein, at 5,009,829 to 5,010,479 _RS22270 PFLU_RS22280: PFLU_RS22280 - hypothetical protein, at 5,010,503 to 5,011,741 _RS22280
Group Condition PFLU_RS31775 PFLU_RS22260 PFLU_RS22265 PFLU_RS22270 PFLU_RS22280
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.8 -0.4 -0.1 -0.2 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.3 +0.0 -0.6 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.2 +0.1 -0.8 +0.3 -0.4
carbon source D-Xylose (C) -1.6 -0.1 -0.3 -0.4 +0.4
carbon source p-Coumaric (C) 5 mM -0.5 -1.3 +0.0 +0.3 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.8 +0.4 -0.1 -0.1 -0.0
carbon source acetate (C) -1.9 +0.5 +0.1 +0.1 -0.2
carbon source Cytidine 10 mM (C) -1.3 -0.4 -0.2 +0.3 +0.2
carbon source L-Arabinose (C) -1.5 +0.1 -0.2 +0.1 +0.3
stress Glucose (C) and Betaine (N); with TAPS; with chloride -2.1 +0.6 -0.0 +0.4 +0.0
carbon source 4-Aminobutyric (C) -1.3 +0.7 +0.1 -0.1 -0.5
carbon source Xanthosine (C) -1.8 +0.6 +0.4 -0.1 -0.1
carbon source octanoate 10 mM (C) -0.8 -0.9 +0.2 +0.3 +0.4
carbon source L-Valine 10 mM (C) -0.9 +1.0 -0.5 +0.4 -1.0
carbon source p-Coumaric (C) 5 mM +0.7 -1.0 -0.4 +0.6 -0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.7 -0.2 -0.5 -0.8 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.9 +0.6 -0.4 -0.1 +0.4
carbon source L-Isoleucine (C) -1.5 +0.4 -0.1 +0.3 +0.6
stress Betaine (C)(N); with MOPS; with chloride -0.7 +0.6 -0.7 +0.4 +0.2
carbon source L-Valine 10 mM (C) -0.7 +0.5 -0.6 +0.6 +0.1
carbon source L-Carnitine (C) -1.4 -0.1 +0.1 +0.5 +0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.8 +0.9 -0.6 +0.2 -1.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -0.6 -0.4 +0.4 +0.7
carbon source Xanthosine (C) -1.5 +0.8 +0.1 +0.5 +0.5
pH Growth at pH8 and (C) Trisodium citrate -0.7 +1.1 -0.2 +0.3 +0.2
carbon source Phloretic Acid 2 mM (C) -1.1 +0.4 +0.2 +0.2 +0.8
pH Growth at pH9 and (C) Trisodium citrate +0.5 +0.9 -0.3 +0.6 -1.0
carbon source NAG (C) -0.4 +1.0 -0.1 -0.1 +0.6
carbon source acetate 30 mM (C) -0.3 +0.6 +1.2 +0.1 +0.3
carbon source acetate 30 mM (C) +0.6 +0.6 +1.0 +0.1 -0.2
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