Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS21905 and PFLU_RS21910 are separated by 84 nucleotidesPFLU_RS21910 and PFLU_RS21915 are separated by 201 nucleotidesPFLU_RS21915 and PFLU_RS21920 are separated by 121 nucleotidesPFLU_RS21920 and PFLU_RS21925 are separated by 276 nucleotides PFLU_RS21905: PFLU_RS21905 - SelT/SelW/SelH family protein, at 4,930,737 to 4,931,024 _RS21905 PFLU_RS21910: PFLU_RS21910 - BamA/TamA family outer membrane protein, at 4,931,109 to 4,933,298 _RS21910 PFLU_RS21915: PFLU_RS21915 - MarR family transcriptional regulator, at 4,933,500 to 4,933,934 _RS21915 PFLU_RS21920: PFLU_RS21920 - DNA helicase RecQ, at 4,934,056 to 4,936,182 _RS21920 PFLU_RS21925: PFLU_RS21925 - YecA family protein, at 4,936,459 to 4,937,046 _RS21925
Group Condition PFLU_RS21905 PFLU_RS21910 PFLU_RS21915 PFLU_RS21920 PFLU_RS21925
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 +0.1 -1.0 -0.2 -2.3
stress malate (C) and Ammonium chloride (N); with TAPS -0.6 +0.1 +0.1 -0.3 -3.2
no stress control L-Glutamine (C)(N); with TAPS -1.2 +0.6 +0.4 -0.3 -2.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.1 +1.2 -0.0 -4.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +0.5 -1.8 -0.1 -1.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 +0.1 +0.9 -0.0 -3.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.7 +1.0 -2.4 +0.0 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.3 +1.5 -2.9 -0.1 -0.4
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.3 +1.3 -2.0 +0.1 +0.7
carbon source L-Valine 10 mM (C) -0.6 -0.4 -2.0 +0.3 +1.5
stress Betaine (C)(N); with TAPS; with chloride +0.2 +1.1 -1.5 -0.0 -0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 -0.1 +1.5 +0.1 -2.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 +0.7 -2.1 -0.1 +0.7
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.5 +1.5 -1.1 -0.1 -0.6
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.0 +1.6 -1.9 -0.2 -0.3
carbon source Ferulic Acid (C) 1.5 mM +0.3 -0.1 -2.1 +0.0 +1.3
carbon source L-Valine 10 mM (C) -0.5 -0.2 -1.9 +0.6 +1.7
carbon source acetate 30 mM (C) -1.2 +0.7 +1.0 +0.0 -0.8
carbon source Xanthosine (C) +1.0 +0.9 -1.3 +0.5 -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 +1.2 -1.9 +0.0 +0.8
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.8 -2.3 +0.1 +1.6
carbon source D-Mannitol (C) -0.9 +1.0 -1.0 +0.2 +1.2
carbon source L-Valine 10 mM (C) -0.7 -0.2 -0.7 +0.5 +1.7
carbon source acetate (C) -0.2 +1.1 -1.1 +0.0 +1.3
carbon source D-Mannitol (C) -0.1 +1.3 -1.5 +0.6 +1.1
stress Betaine (C)(N); with MOPS; with chloride +0.1 +0.9 -1.1 -0.0 +1.8
pH Growth at pH8 and (C) Trisodium citrate -0.9 +1.1 -0.3 +0.4 +1.6
carbon source L-Valine (C) -0.3 +0.6 -0.7 +0.3 +2.6
carbon source L-Isoleucine (C) +0.6 +0.8 -0.7 +0.3 +1.7
stress Betaine (C)(N); with MOPS; with chloride +0.8 +0.8 -0.1 +0.4 +1.7
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