Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS21610 and PFLU_RS21615 are separated by 0 nucleotidesPFLU_RS21615 and PFLU_RS21620 are separated by 79 nucleotidesPFLU_RS21620 and PFLU_RS21625 overlap by 1 nucleotidesPFLU_RS21625 and PFLU_RS21630 are separated by 50 nucleotides PFLU_RS21610: PFLU_RS21610 - DUF2802 domain-containing protein, at 4,872,599 to 4,872,991 _RS21610 PFLU_RS21615: PFLU_RS21615 - chemotaxis protein CheW, at 4,872,992 to 4,873,474 _RS21615 PFLU_RS21620: PFLU_RS21620 - CheW domain-containing protein, at 4,873,554 to 4,874,366 _RS21620 PFLU_RS21625: PFLU_RS21625 - ParA family protein, at 4,874,366 to 4,875,154 _RS21625 PFLU_RS21630: PFLU_RS21630 - flagellar motor protein MotD, at 4,875,205 to 4,876,092 _RS21630
Group Condition PFLU_RS21610 PFLU_RS21615 PFLU_RS21620 PFLU_RS21625 PFLU_RS21630
carbon source D,L-Malic Acid (C) -1.0 -3.4 -1.4 -1.4 -1.8
carbon source L-Malic (C) -0.9 -2.7 -0.9 -1.5 -1.6
carbon source L-Malic (C) -1.0 -2.6 -0.9 -1.3 -1.0
carbon source D,L-Malic Acid (C) -0.8 -2.5 -0.7 -1.6 -1.1
carbon source Fumarate (C) -0.6 -2.8 -0.5 -1.3 -0.9
carbon source L-Glutamic (C) -1.0 -2.2 -0.4 -1.1 -1.4
carbon source Xanthosine (C) -1.5 -1.3 -0.4 -1.0 -1.4
carbon source Fumarate (C) -0.8 -2.2 -0.7 -1.0 -0.7
no stress control Glucose (C) and Glycine betaine (N); with TAPS -0.0 -2.6 -0.7 -0.9 -1.3
carbon source succinate (C) -0.7 -2.0 -0.8 -1.2 -0.7
carbon source L-Malic (C) -0.1 -1.6 -1.1 -1.3 -1.1
carbon source succinate (C) -0.5 -2.3 -0.5 -1.2 -0.6
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.3 -1.7 -0.9 -0.7 -1.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 -2.1 -0.3 -0.7 -1.3
carbon source L-Lactate (C) -0.4 -2.3 -0.5 -1.4 -0.2
carbon source L-Lactate (C) -0.5 -2.2 -0.3 -1.5 -0.2
carbon source Trisodium citrate (C) -0.6 -2.0 -0.7 -0.7 -0.7
carbon source 4-Guanidinobutyric (C) -0.7 -1.4 -1.2 -1.1 -0.4
carbon source D,L-Malic Acid (C) -0.5 -1.5 -0.7 -1.3 -0.6
carbon source succinate (C) -0.2 -2.7 -0.2 -1.0 -0.3
no stress control Glucose (C) and Glycine betaine (N); with TAPS +0.1 -2.4 -0.3 -0.7 -1.0
no stress control Glucose (C) and Glycine betaine (N); with TAPS +0.3 -2.3 -0.2 -0.7 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.8 +1.6 -0.1 +0.7 +1.1
carbon source acetate (C) +0.4 +1.1 +0.7 +1.3 +0.8
carbon source acetate (C) +0.6 +0.7 +1.0 +1.8 +0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.3 +1.9 +0.3 +0.9 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.7 +1.5 +0.0 +1.0 +0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.4 +1.8 +0.2 +0.7 +1.0
carbon source L-Valine (C) +0.9 +1.4 +0.3 +1.3 +1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.3 +1.8 +0.3 +0.8 +1.0
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