Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS21075 and PFLU_RS21080 overlap by 4 nucleotidesPFLU_RS21080 and PFLU_RS21085 are separated by 95 nucleotidesPFLU_RS21085 and PFLU_RS21090 are separated by 223 nucleotidesPFLU_RS21090 and PFLU_RS31735 are separated by 222 nucleotides PFLU_RS21075: PFLU_RS21075 - RraA family protein, at 4,735,697 to 4,736,362 _RS21075 PFLU_RS21080: PFLU_RS21080 - pyridoxal phosphate-dependent aminotransferase, at 4,736,359 to 4,737,564 _RS21080 PFLU_RS21085: PFLU_RS21085 - cation:dicarboxylase symporter family transporter, at 4,737,660 to 4,738,955 _RS21085 PFLU_RS21090: PFLU_RS21090 - Hsp20 family protein, at 4,739,179 to 4,739,637 _RS21090 PFLU_RS31735: PFLU_RS31735 - LysR family transcriptional regulator, at 4,739,860 to 4,739,958 _RS31735
Group Condition PFLU_RS21075 PFLU_RS21080 PFLU_RS21085 PFLU_RS21090 PFLU_RS31735
temperature shift Temperature shift 30_to_34 -0.4 -0.2 +0.0 -1.7 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.8 -0.6 -0.5 N.D.
no stress control Glycine betaine (C)(N); with TAPS -0.7 -0.8 -0.1 -0.3 N.D.
temperature shift Temperature shift 30_to_34 -0.0 +0.1 -0.0 -1.6 N.D.
carbon source Shikimic Acid (C) -0.3 -1.0 -0.1 -0.1 N.D.
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.1 -0.2 -0.6 N.D.
carbon source p-Coumaric (C) 5 mM -0.4 +0.1 -0.4 -0.4 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 -0.1 +0.3 -0.7 N.D.
carbon source L-Valine (C) -0.4 -0.2 -0.7 +0.5 N.D.
carbon source D,L-Malic Acid (C) -0.4 -0.2 -0.4 +0.2 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.7 +0.1 -0.6 N.D.
nitrogen source Ammonium chloride (N); with MOPS -0.6 +0.0 +0.3 -0.3 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 +0.2 +0.3 -0.4 N.D.
carbon source L-Carnitine (C) +0.6 -0.0 -0.1 -0.7 N.D.
carbon source propionate 20 mM (C) +0.4 +0.1 -0.4 -0.4 N.D.
pH Growth at pH7 and (C) D-Glucose -0.2 -0.4 -0.2 +0.5 N.D.
carbon source Xanthosine (C) -0.5 +0.6 +0.1 -0.4 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.6 -0.2 +0.1 -0.5 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 +0.2 +0.5 -0.3 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 +0.5 +0.2 +0.3 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.2 +0.2 -0.7 N.D.
carbon source Xanthosine (C) -0.4 +0.5 +0.3 -0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +0.4 +0.5 -0.3 N.D.
carbon and nitrogen source NAG carbon and (N) -0.4 +0.4 +0.1 +0.5 N.D.
carbon source acetate 30 mM (C) +0.5 -0.2 -0.4 +0.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 +0.4 +0.3 +0.5 N.D.
nitrogen source NAG (N); with MOPS +0.5 +0.4 +0.2 -0.3 N.D.
carbon source L-Carnitine (C) +0.4 +0.2 +0.3 +0.6 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 +0.2 +0.4 +0.4 N.D.
pH Growth at pH9 and (C) Trisodium citrate +0.8 +0.7 +0.2 +0.2 N.D.
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