Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS31000 and PFLU_RS21070 are separated by 120 nucleotidesPFLU_RS21070 and PFLU_RS21075 are separated by 122 nucleotidesPFLU_RS21075 and PFLU_RS21080 overlap by 4 nucleotidesPFLU_RS21080 and PFLU_RS21085 are separated by 95 nucleotides PFLU_RS31000: PFLU_RS31000 - hypothetical protein, at 4,734,172 to 4,734,557 _RS31000 PFLU_RS21070: PFLU_RS21070 - LysR family transcriptional regulator, at 4,734,678 to 4,735,574 _RS21070 PFLU_RS21075: PFLU_RS21075 - RraA family protein, at 4,735,697 to 4,736,362 _RS21075 PFLU_RS21080: PFLU_RS21080 - pyridoxal phosphate-dependent aminotransferase, at 4,736,359 to 4,737,564 _RS21080 PFLU_RS21085: PFLU_RS21085 - cation:dicarboxylase symporter family transporter, at 4,737,660 to 4,738,955 _RS21085
Group Condition PFLU_RS31000 PFLU_RS21070 PFLU_RS21075 PFLU_RS21080 PFLU_RS21085
carbon source L-Valine (C) -0.7 -0.8 -0.4 -0.2 -0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.6 -0.1 -0.8 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.6 -0.2 -0.7 +0.2
carbon source Inosine (C) -0.2 -0.5 +0.1 -0.2 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -0.5 -0.4 +0.0 +0.1
nitrogen source nitrate (N); with MOPS -0.1 -0.6 -0.5 +0.2 -0.2
stress Glucose (C) and Betaine (N); with MOPS; with chloride -0.2 -0.7 +0.2 -0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -0.4 -0.6 +0.1 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.4 -0.5 -0.1 -0.3
no stress control Glycine betaine (C)(N); with TAPS +0.7 -0.2 -0.7 -0.8 -0.1
carbon source Shikimic Acid (C) +0.4 +0.2 -0.3 -1.0 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.4 -1.0 -0.5 +0.2 +0.1
pH Growth at pH8 and (C) D-Glucose -0.4 -0.3 -0.4 +0.5 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.4 -0.7 +0.3 -0.1
stress Betaine (C)(N); with TAPS; with chloride +0.2 -1.1 +0.1 +0.4 +0.0
carbon source p-Coumaric 2 mM (C) -0.4 -0.1 +0.3 +0.3 -0.4
carbon source L-Valine 10 mM (C) +0.3 +0.5 -0.2 -0.3 -0.5
stress Growth with Chloride 200 mM -0.3 -0.2 -0.4 +0.4 +0.2
carbon source L-Lysine (C) +0.2 -1.2 -0.1 +0.6 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.1 -1.0 +0.5 +0.2
carbon source Ferulic Acid (C) 1.5 mM +0.4 +0.4 -0.4 +0.1 -0.3
carbon source Phloretic Acid 2 mM (C) +0.5 -0.2 +0.3 +0.3 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.4 +0.6 +0.0 -0.5
stress Betaine (C)(N); with MOPS; with chloride +0.6 +0.4 +0.4 -0.7 +0.1
carbon source Xanthosine (C) +0.3 +0.4 -0.4 +0.5 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -0.4 +0.6 +0.2 +0.4
pH Growth at pH9 and (C) Trisodium citrate +0.3 -0.6 +0.8 +0.7 +0.2
carbon source caffeic 2 mM (C) +0.3 +0.3 +0.3 +0.5 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.5 -0.1 +0.7 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.8 -0.2 +0.4 +0.5
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