Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS20805 and PFLU_RS20810 are separated by 138 nucleotidesPFLU_RS20810 and PFLU_RS20815 are separated by 17 nucleotidesPFLU_RS20815 and PFLU_RS20820 overlap by 4 nucleotidesPFLU_RS20820 and PFLU_RS20825 are separated by 231 nucleotides PFLU_RS20805: PFLU_RS20805 - AraC family transcriptional regulator, at 4,679,274 to 4,680,170 _RS20805 PFLU_RS20810: PFLU_RS20810 - SDR family oxidoreductase, at 4,680,309 to 4,681,052 _RS20810 PFLU_RS20815: PFLU_RS20815 - extradiol dioxygenase, at 4,681,070 to 4,681,471 _RS20815 PFLU_RS20820: PFLU_RS20820 - membrane protein, at 4,681,468 to 4,682,445 _RS20820 PFLU_RS20825: PFLU_RS20825 - VOC family protein, at 4,682,677 to 4,683,108 _RS20825
Group Condition PFLU_RS20805 PFLU_RS20810 PFLU_RS20815 PFLU_RS20820 PFLU_RS20825
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 -0.1 -0.3 -0.4 -0.5
carbon source p-Coumaric 2 mM (C) -0.6 +0.1 -0.2 +0.0 -0.8
pH Growth at pH9 and (C) D-Glucose -0.4 -0.2 -0.3 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.6 -0.9 +0.0 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 +0.2 -0.2 +0.3 -0.3
carbon source L-Lysine (C) +0.1 +0.2 -1.1 -0.2 +0.0
carbon source L-Valine (C) +0.1 -0.1 -0.8 +0.2 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.0 +0.4 -0.1 -0.2 -0.9
carbon source 4-Guanidinobutyric (C) +0.3 -0.6 +0.1 +0.0 -0.5
no stress control Glucose (C) and L-Glutamine (N); with MOPS +0.1 -0.4 +0.4 -0.1 -0.3
carbon source Phloretic Acid 2 mM (C) -0.5 -0.4 +0.3 +0.3 +0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.3 +0.1 -0.5 +0.2 +0.3
stress Betaine (C)(N); with TAPS; with chloride -0.0 -0.4 +0.3 -0.3 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.5 -0.5 +0.1 +0.1
carbon source Shikimic Acid (C) +0.4 -0.1 +0.4 +0.1 -0.7
stress Betaine (C)(N); with TAPS; with chloride -0.4 +0.3 +0.4 +0.2 -0.4
carbon source NAG (C) -0.2 -0.2 +0.4 +0.5 -0.1
stress L-Glutamine (C)(N); with TAPS; with chloride -0.7 +0.0 +0.7 +0.0 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.6 -0.1 +0.1 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.5 +0.5 +0.3 +0.2 -0.2
carbon source Inosine (C) +0.3 -0.2 +0.7 -0.2 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.7 -0.2 -0.0 +0.5 -0.5
carbon source L-Valine 10 mM (C) +0.3 +0.3 +0.5 +0.0 -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.4 +0.2 -0.3 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.1 +0.7 +0.2 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.3 +0.8 -0.2 +0.1
carbon source L-Valine 10 mM (C) +0.2 +0.2 +0.5 +0.4 -0.3
stress Betaine (C)(N); with MOPS; with chloride +0.6 +0.4 +0.2 +0.3 -0.4
no stress control L-Glutamine (C)(N); with MOPS -0.5 +0.7 +0.5 +0.3 +0.3
carbon source L-Valine (C) +0.6 +0.4 -0.0 +0.3 +0.1
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