Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS20665 and PFLU_RS20670 are separated by 17 nucleotidesPFLU_RS20670 and PFLU_RS20675 are separated by 103 nucleotidesPFLU_RS20675 and PFLU_RS20680 are separated by 102 nucleotidesPFLU_RS20680 and PFLU_RS20685 are separated by 112 nucleotides PFLU_RS20665: PFLU_RS20665 - hypothetical protein, at 4,654,900 to 4,655,109 _RS20665 PFLU_RS20670: PFLU_RS20670 - LysR family transcriptional regulator, at 4,655,127 to 4,655,999 _RS20670 PFLU_RS20675: PFLU_RS20675 - aldehyde dehydrogenase family protein, at 4,656,103 to 4,657,494 _RS20675 PFLU_RS20680: PFLU_RS20680 - LysR family transcriptional regulator, at 4,657,597 to 4,658,520 _RS20680 PFLU_RS20685: PFLU_RS20685 - MFS transporter, at 4,658,633 to 4,659,832 _RS20685
Group Condition PFLU_RS20665 PFLU_RS20670 PFLU_RS20675 PFLU_RS20680 PFLU_RS20685
carbon source 4-hydroxyphenylacetic 2 mM (C) N.D. -0.3 -1.3 +0.2 -0.3
carbon source 4-hydroxyphenylacetic 2 mM (C) N.D. -0.3 -1.0 -0.1 -0.0
carbon source 4-hydroxyphenylacetic 2 mM (C) N.D. -0.3 -1.2 +0.4 -0.1
carbon source acetate 30 mM (C) N.D. -0.6 +0.2 -0.2 -0.4
carbon source m-Inositol (C) N.D. -0.4 -0.2 -0.1 -0.2
stress L-Glutamine (C)(N); with MOPS; with chloride N.D. -0.4 -0.1 -0.5 +0.1
carbon source Shikimic Acid (C) N.D. -0.3 -0.2 -0.5 +0.1
carbon source 4-Guanidinobutyric (C) N.D. -0.6 -0.3 -0.1 +0.1
carbon source Phloretic Acid 2 mM (C) N.D. -0.6 +0.1 -0.0 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -1.0 -0.1 +0.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.3 -0.3 -0.3 +0.1
carbon source p-Coumaric 2 mM (C) N.D. +0.2 -0.0 -0.5 -0.3
carbon source NAG (C) N.D. -0.1 -0.4 +0.3 -0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. -0.3 +0.3 -0.4 -0.2
carbon source sn-glycero-3-phosphocholine (C) N.D. -0.4 +0.1 -0.4 +0.1
temperature shift Temperature shift 30_to_10 N.D. -0.3 -0.3 +0.2 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.5 -0.4 -0.0 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.1 +0.3 -0.6 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +0.2 +0.2 -0.4 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.4 +0.1 -0.1 +0.3
pH Growth at pH6 and (C) D-Glucose N.D. +0.4 -0.1 +0.1 -0.4
pH Growth at pH8 and (C) Trisodium citrate N.D. +0.3 -0.1 -0.4 +0.4
stress L-Glutamine (C)(N); with TAPS; with chloride N.D. -0.3 +0.1 +0.5 +0.1
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.5 +0.2 +0.5 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.3 +0.3 +0.4 +0.2
carbon source Sucrose 5 mM (C) N.D. -0.2 +0.3 +0.5 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. +0.1 +0.4 +0.4 -0.2
temperature Growth at 30C N.D. +0.2 +0.3 +0.4 -0.2
stress Growth with Chloride 200 mM; with MOPS N.D. +0.3 +0.2 +0.4 -0.1
carbon source caffeic 2 mM (C) N.D. +0.6 -0.1 +0.3 +0.2
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