Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS31705 and PFLU_RS31305 are separated by 117 nucleotidesPFLU_RS31305 and PFLU_RS20185 are separated by 156 nucleotidesPFLU_RS20185 and PFLU_RS20190 are separated by 94 nucleotidesPFLU_RS20190 and PFLU_RS30960 overlap by 20 nucleotides PFLU_RS31705: PFLU_RS31705 - hypothetical protein, at 4,570,800 to 4,571,291 _RS31705 PFLU_RS31305: PFLU_RS31305 - cell wall hydrolase, at 4,571,409 to 4,571,512 _RS31305 PFLU_RS20185: PFLU_RS20185 - hypothetical protein, at 4,571,669 to 4,571,911 _RS20185 PFLU_RS20190: PFLU_RS20190 - hypothetical protein, at 4,572,006 to 4,572,362 _RS20190 PFLU_RS30960: PFLU_RS30960 - lysis protein, at 4,572,343 to 4,572,465 _RS30960
Group Condition PFLU_RS31705 PFLU_RS31305 PFLU_RS20185 PFLU_RS20190 PFLU_RS30960
stress Betaine (C)(N); with TAPS; with chloride N.D. -0.9 -0.6 -0.2 -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.9 -1.1 -0.2 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.8 -0.7 -0.3 -0.4
carbon source caffeic 2 mM (C) N.D. -0.6 -1.0 -0.2 -0.5
carbon source Xanthosine (C) N.D. +0.3 -2.1 -0.5 +0.2
carbon source Xanthosine 10 mM (C) N.D. -1.1 +0.2 -0.1 -0.8
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -1.2 -0.4 +0.4 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.0 -2.0 +0.3 -0.0
nitrogen source nitrate (N); with MOPS N.D. +0.1 -1.4 +0.0 -0.4
carbon source L-Valine (C) N.D. -0.1 -1.4 +0.4 -0.6
carbon source L-Carnitine (C) N.D. -0.9 +0.4 -0.3 -0.9
carbon source m-Inositol (C) N.D. -0.5 -1.3 -0.1 +0.5
no stress control Glucose (C) and L-Glutamine (N); with TAPS N.D. -0.9 -0.7 +0.4 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS N.D. -1.7 +0.3 +0.1 +0.1
pH Growth at pH7 and (C) D-Glucose N.D. +0.5 -0.9 +0.1 -0.5
stress Betaine (C)(N); with TAPS; with chloride N.D. +0.5 +0.2 -0.1 -1.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.3 -1.7 +0.3 +0.4
carbon source Phloretic Acid 2 mM (C) N.D. +0.9 -1.1 +0.0 -0.5
carbon source Sucrose 5 mM (C) N.D. -1.1 +0.7 -0.1 -0.1
carbon source NAG (C) N.D. +0.2 -1.4 +0.1 +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.5 +0.8 +0.1 -0.7
carbon source Inosine (C) N.D. -0.4 -0.9 +0.1 +1.0
carbon source L-Valine (C) N.D. -1.1 +1.1 +0.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.4 +0.8 -0.2 -0.6
no stress control Glycine betaine (C)(N); with MOPS N.D. +0.5 -0.9 +0.2 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.6 +1.0 +0.4 +0.1
carbon and nitrogen source NAG carbon and (N) N.D. +0.7 -0.6 +0.2 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.6 +0.6 +0.2 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.5 +0.8 +0.0 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.1 +0.8 -0.3 +1.1
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