Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS20120 and PFLU_RS20125 are separated by 99 nucleotidesPFLU_RS20125 and PFLU_RS20130 are separated by 32 nucleotidesPFLU_RS20130 and PFLU_RS20135 overlap by 4 nucleotidesPFLU_RS20135 and PFLU_RS20140 are separated by 2 nucleotides PFLU_RS20120: PFLU_RS20120 - diguanylate cyclase, at 4,554,309 to 4,555,844 _RS20120 PFLU_RS20125: PFLU_RS20125 - VacJ family lipoprotein, at 4,555,944 to 4,556,698 _RS20125 PFLU_RS20130: PFLU_RS20130 - efflux transporter outer membrane subunit, at 4,556,731 to 4,558,125 _RS20130 PFLU_RS20135: PFLU_RS20135 - multidrug efflux RND transporter permease subunit, at 4,558,122 to 4,561,256 _RS20135 PFLU_RS20140: PFLU_RS20140 - efflux RND transporter periplasmic adaptor subunit, at 4,561,259 to 4,562,443 _RS20140
Group Condition PFLU_RS20120 PFLU_RS20125 PFLU_RS20130 PFLU_RS20135 PFLU_RS20140
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.3 -0.5 -0.4 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +0.1 -0.4 -0.6 -0.3
carbon source Inosine (C) -0.2 -0.4 -0.5 -0.2 +0.0
no stress control Glycine betaine (C)(N); with TAPS -0.1 -0.2 +0.2 -0.3 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.4 -0.3 +0.3 -0.6 -0.3
carbon source Xanthosine (C) -0.2 +0.0 -0.4 -0.2 -0.5
carbon source propionate 20 mM (C) +0.1 -0.2 -0.8 -0.2 -0.0
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.5 -0.0 -0.5 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.3 +0.1 -0.3 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.2 -0.4 -0.4 -0.2
carbon source L-Valine (C) -0.6 -0.3 -0.0 -0.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.4 -0.3 -0.4 +0.1
no stress control Glycine betaine (C)(N); with MOPS +0.1 -0.7 -0.2 -0.2 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.5 +0.1 -0.3 -0.1 -0.1
stress Betaine (C)(N); with MOPS; with chloride -0.1 -0.4 -0.5 +0.2 +0.0
carbon source L-Valine (C) -0.3 -0.4 +0.4 -0.3 +0.0
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.1 -0.3 -0.3 -0.1
pH Growth at pH9 and (C) Trisodium citrate +0.3 +0.2 -0.5 +0.3 -0.7
carbon source Shikimic Acid (C) -0.4 -0.2 +0.2 -0.1 +0.2
pH Growth at pH7 and (C) D-Glucose +0.1 -0.5 +0.1 -0.4 +0.3
carbon source caffeic 2 mM (C) -0.0 +0.5 -0.1 -0.3 -0.4
carbon source m-Inositol (C) -0.6 -0.0 +0.2 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 +0.5 -0.1 -0.4 -0.1
carbon source Phloretic Acid 2 mM (C) -0.4 +0.2 +0.3 -0.2 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.2 -0.2 -0.2 +0.2
carbon source 4-Aminobutyric (C) -0.2 -0.2 +0.6 -0.2 +0.3
carbon source NAG (C) -0.2 +0.3 -0.3 +0.3 +0.2
carbon source L-Carnitine (C) +0.5 -0.2 +0.5 -0.1 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 +0.5 +0.2 +0.2 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 +0.5 -0.1 -0.2
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