Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS20020 and PFLU_RS20025 are separated by 37 nucleotidesPFLU_RS20025 and PFLU_RS20030 are separated by 2 nucleotidesPFLU_RS20030 and PFLU_RS20035 are separated by 12 nucleotidesPFLU_RS20035 and PFLU_RS20040 are separated by 64 nucleotides PFLU_RS20020: PFLU_RS20020 - gamma-glutamyltransferase family protein, at 4,531,141 to 4,532,751 _RS20020 PFLU_RS20025: PFLU_RS20025 - amino acid ABC transporter ATP-binding protein, at 4,532,789 to 4,533,568 _RS20025 PFLU_RS20030: PFLU_RS20030 - amino acid ABC transporter permease, at 4,533,571 to 4,534,347 _RS20030 PFLU_RS20035: PFLU_RS20035 - ABC transporter substrate-binding protein, at 4,534,360 to 4,535,166 _RS20035 PFLU_RS20040: PFLU_RS20040 - GntR family transcriptional regulator, at 4,535,231 to 4,535,899 _RS20040
Group Condition PFLU_RS20020 PFLU_RS20025 PFLU_RS20030 PFLU_RS20035 PFLU_RS20040
carbon source L-Valine (C) +0.1 -2.1 +0.3 -0.2 -3.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -1.5 +0.2 -0.1 -1.7
stress Betaine (C)(N); with MOPS; with chloride -0.3 -1.6 +0.0 -0.0 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -2.9 +0.3 +0.2 -0.7
carbon source L-Ornithine (C) -0.0 -1.8 +0.1 +0.0 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -1.7 -0.3 -0.2 -0.3
stress Betaine (C)(N); with MOPS; with chloride +0.0 -0.6 -0.1 +0.1 -2.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -2.5 +0.4 +0.4 -0.8
stress Betaine (C)(N); with TAPS; with chloride -0.6 -0.3 +0.3 -0.7 -1.2
carbon source L-Valine (C) +0.5 -1.6 +0.6 +0.0 -1.9
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.0 -0.2 +0.1 -0.2 -2.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 -1.6 +0.2 -0.3 -0.5
temperature shift Temperature shift 30_to_25; with MOPS +0.1 -1.7 -0.3 -0.1 +0.4
carbon source propionate 20 mM (C) -0.6 +0.4 +0.1 +0.1 -1.5
carbon source Inosine (C) -0.5 -0.6 -0.9 +0.7 -0.2
carbon source L-Carnitine (C) +0.2 -1.0 -0.1 +0.6 -1.1
carbon source p-Coumaric (C) 5 mM -0.1 +0.5 +0.1 +0.2 -1.9
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -1.0 -0.4 +0.1 +0.7
carbon source L-Ornithine 10 mM (C) +0.2 -1.1 +0.4 +0.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -1.7 +0.2 +0.2 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +1.0 -0.1 -0.3 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.5 +0.3 +0.5 -1.4
carbon source L-Arabinose (C) +0.3 -0.7 +0.3 +0.5 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 +0.4 +0.3 +0.5 -1.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 +0.4 +0.4 +0.5 -1.4
carbon source Xanthosine (C) -0.1 +1.0 +0.2 +0.5 -1.6
carbon source L-Arabinose (C); with MOPS +0.2 +1.3 +0.1 -0.3 -1.1
carbon source Xanthosine (C) +0.3 +1.0 +0.2 -0.2 -1.1
carbon source D,L-Malic Acid (C) -0.0 +1.4 +0.2 +0.5 -1.4
carbon source 4-Aminobutyric (C) -0.3 +0.3 +0.4 -0.6 +1.4
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