Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS19635 and PFLU_RS19640 are separated by 94 nucleotidesPFLU_RS19640 and PFLU_RS19645 overlap by 4 nucleotidesPFLU_RS19645 and PFLU_RS19650 overlap by 4 nucleotidesPFLU_RS19650 and PFLU_RS19655 overlap by 4 nucleotides PFLU_RS19635: PFLU_RS19635 - SDR family oxidoreductase, at 4,445,510 to 4,446,262 _RS19635 PFLU_RS19640: PFLU_RS19640 - 5-oxoprolinase subunit PxpA, at 4,446,357 to 4,447,130 _RS19640 PFLU_RS19645: PFLU_RS19645 - hypothetical protein, at 4,447,127 to 4,447,519 _RS19645 PFLU_RS19650: PFLU_RS19650 - biotin-dependent carboxyltransferase family protein, at 4,447,516 to 4,448,490 _RS19650 PFLU_RS19655: PFLU_RS19655 - 5-oxoprolinase subunit PxpB, at 4,448,487 to 4,449,143 _RS19655
Group Condition PFLU_RS19635 PFLU_RS19640 PFLU_RS19645 PFLU_RS19650 PFLU_RS19655
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.4 -1.2 -0.4 +0.7 -0.6
stress Betaine (C)(N); with MOPS; with chloride -2.2 +0.0 -0.7 +0.1 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.1 -1.2 -0.3 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -3.2 +0.7 -0.5 -0.0 +0.3
carbon source NAG (C) -0.8 -0.6 -0.5 -0.3 -0.5
carbon source Inosine (C) -1.4 -1.2 -0.7 +0.1 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -1.4 -0.7 -0.2 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -1.3 -0.7 +0.2 -0.5 +0.0
carbon source D-Glucose (C) 3 mM -1.3 +0.5 -0.5 -0.2 -0.6
stress Betaine (C)(N); with TAPS; with chloride -3.1 +0.6 +0.1 +0.2 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.4 +0.3 -0.0 +0.4 +0.0
pH Growth at pH9 and (C) Trisodium citrate -1.0 -0.8 -0.1 +0.6 -0.3
nitrogen source nitrate (N); with MOPS -1.6 -0.4 +0.5 -0.1 +0.2
carbon source propionate (C) +0.8 -1.5 +0.1 -0.1 -0.7
stress Glucose (C) and L-Glutamine (N); with TAPS; with chloride -1.6 +0.4 +0.3 -0.3 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.7 -1.1 -0.6 -0.4 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.1 -0.3 +0.7 -1.0 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.2 +1.0 -0.4 -0.1 -0.4
carbon source Phloretic Acid 2 mM (C) +0.8 +0.1 -1.4 -0.1 -0.3
nitrogen source NAG (N); with MOPS -0.8 +0.6 -1.1 +0.3 +0.1
carbon source Inosine (C) +1.2 -1.1 -0.0 -0.0 -0.6
carbon source Xanthosine (C) -2.0 +0.1 +1.3 +0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 +1.1 +0.4 -0.4 -0.2
carbon source L-Ornithine 10 mM (C) +1.1 -1.1 +0.2 +0.3 -0.5
carbon source L-Valine (C) +2.2 -0.0 -1.0 -0.2 -0.7
carbon source L-Carnitine (C) +1.7 -1.1 +0.4 -0.7 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.2 -0.0 -1.0 +0.5 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +1.1 -0.7 +0.3 +0.3 -0.4
stress Betaine (C)(N); with MOPS; with chloride +1.9 -0.3 -0.5 -0.0 -0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.2 +0.9 -0.2 -0.2 +0.3
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