Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS19555 and PFLU_RS19560 are separated by 175 nucleotidesPFLU_RS19560 and PFLU_RS19565 overlap by 1 nucleotidesPFLU_RS19565 and PFLU_RS19570 are separated by 243 nucleotidesPFLU_RS19570 and PFLU_RS19575 are separated by 212 nucleotides PFLU_RS19555: PFLU_RS19555 - histidine phosphatase family protein, at 4,423,695 to 4,424,369 _RS19555 PFLU_RS19560: PFLU_RS19560 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 4,424,545 to 4,426,200 _RS19560 PFLU_RS19565: PFLU_RS19565 - dolichyl-phosphate-mannose--protein mannosyltransferase, at 4,426,200 to 4,427,720 _RS19565 PFLU_RS19570: PFLU_RS19570 - sugar ABC transporter ATP-binding protein, at 4,427,964 to 4,428,647 _RS19570 PFLU_RS19575: PFLU_RS19575 - non-ribosomal peptide synthetase, at 4,428,860 to 4,435,081 _RS19575
Group Condition PFLU_RS19555 PFLU_RS19560 PFLU_RS19565 PFLU_RS19570 PFLU_RS19575
nitrogen source nitrate (N); with MOPS -4.5 +0.1 +0.1 +0.2 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -5.2 +0.3 +0.2 +0.0 +0.6
carbon source Xanthosine (C) -2.7 -0.3 -0.1 -0.8 +0.0
stress Sucrose (C) and L-Glutamine (N); with MOPS; with PEG -3.4 -0.2 +0.0 +0.0 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -4.3 +0.5 -0.0 +0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -3.9 +0.2 +0.2 -0.6 +0.6
pH Growth at pH9 and (C) D-Glucose -3.4 -0.2 +0.1 -0.0 +0.0
temperature Growth at 34C -3.4 +0.1 -0.1 -0.1 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -3.8 +0.6 -0.0 -0.2 -0.1
no stress control Glucose (C) and L-Glutamine (N); with TAPS -3.9 +0.2 +0.1 +0.1 +0.2
nitrogen source nitrate (N) -2.8 -0.2 -0.0 -0.3 +0.0
no stress control Glucose (C) and nitrate (N); with MOPS -3.3 -0.1 +0.1 +0.3 +0.0
carbon source 4-Aminobutyric (C) -3.1 +0.5 +0.0 -0.5 +0.2
no stress control Glucose (C) and nitrate (N); with MOPS -2.1 -0.1 -0.0 -0.6 -0.1
carbon source L-Lactate (C) -1.7 -0.7 -0.2 -0.2 -0.1
nitrogen source NAG (N); with MOPS -2.9 -0.1 +0.0 +0.3 -0.1
carbon source p-Coumaric 2 mM (C) -2.4 +0.4 -0.2 -0.6 +0.1
nitrogen source Ammonium chloride (N); with MOPS -2.9 +0.3 -0.2 +0.1 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.3 -0.1 -0.1 -0.3 +0.3
carbon source D-Glucosamine Hydrochloride 10 mM (C) -2.5 -0.3 +0.0 +0.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -3.3 +0.5 -0.2 +0.5 +0.1
carbon source Inosine (C) -2.5 -0.3 -0.0 +0.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.4 +0.4 +0.1 -0.1 -0.1
carbon source D-(+)-Galactosamine 10 mM (C) -2.7 +0.5 +0.1 +0.3 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 +0.3 +0.2 +0.3 +0.1
carbon source L-Ornithine 10 mM (C) -2.2 +0.4 +0.1 +0.3 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.8 -1.2 -0.0 -0.2 +0.1
stress Betaine (C)(N); with MOPS; with chloride +1.9 -0.8 -0.3 -0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.5 +0.5 +0.0 -1.2 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +1.8 +0.1 +0.1 +1.2 -0.1
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