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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS19375 and PFLU_RS30920 are separated by 72 nucleotides
PFLU_RS30920 and PFLU_RS19390 are separated by 270 nucleotides
PFLU_RS19390 and PFLU_RS19395 are separated by 121 nucleotides
PFLU_RS19395 and PFLU_RS19400 are separated by 141 nucleotides
PFLU_RS19375: PFLU_RS19375 - branched-chain amino acid aminotransferase, at 4,382,129 to 4,383,148
_RS19375
PFLU_RS30920: PFLU_RS30920 - GNAT family acetyltransferase, at 4,383,221 to 4,384,114
_RS30920
PFLU_RS19390: PFLU_RS19390 - ornithine cyclodeaminase, at 4,384,385 to 4,385,431
_RS19390
PFLU_RS19395: PFLU_RS19395 - Lrp/AsnC family transcriptional regulator, at 4,385,553 to 4,386,050
_RS19395
PFLU_RS19400: PFLU_RS19400 - IS110 family transposase, at 4,386,192 to 4,387,124
_RS19400
Group
Condition
PFLU
_RS19375
PFLU
_RS30920
PFLU
_RS19390
PFLU
_RS19395
PFLU
_RS19400
carbon source
L-Ornithine (C)
-1.1
+0.4
-3.7
-3.9
N.D.
carbon source
L-Ornithine (C)
-1.2
+0.0
-2.9
-3.8
N.D.
carbon source
L-Ornithine (C)
-0.8
+0.4
-2.8
-2.4
N.D.
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
-5.1
-0.2
+0.0
-0.0
N.D.
carbon source
p-Coumaric 2 mM (C)
-4.3
-0.2
+0.1
-0.8
N.D.
carbon source
L-Isoleucine (C) 10 mM
-5.0
-0.4
+0.2
+0.0
N.D.
carbon source
Phloretic Acid 2 mM (C)
-4.6
-0.2
+0.0
-0.3
N.D.
carbon source
p-Coumaric 2 mM (C)
-4.1
-0.3
-0.0
-0.5
N.D.
carbon source
L-Valine 10 mM (C)
-3.8
+0.0
-0.5
-0.6
N.D.
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
-4.7
-0.1
+0.2
-0.1
N.D.
carbon source
L-Valine 10 mM (C)
-4.4
+0.1
-0.2
-0.1
N.D.
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
-4.3
-0.3
-0.1
+0.0
N.D.
no stress control
4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
-4.8
-0.0
-0.0
+0.2
N.D.
carbon source
L-Isoleucine (C) 10 mM
-4.3
-0.2
+0.0
+0.3
N.D.
carbon source
p-Coumaric (C) 5 mM
-4.0
-0.4
+0.1
+0.1
N.D.
carbon source
Phloretic Acid 2 mM (C)
-4.4
-0.1
-0.2
+0.5
N.D.
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-3.6
-0.3
-0.3
-0.1
N.D.
carbon source
L-Isoleucine (C) 10 mM
-4.3
-0.1
+0.1
+0.1
N.D.
carbon source
Phloretic Acid 2 mM (C)
-4.7
-0.0
+0.5
+0.1
N.D.
carbon source
Ferulic Acid 2 mM (C)
-3.9
+0.0
+0.1
-0.1
N.D.
carbon source
p-Coumaric (C) 5 mM
-4.0
+0.3
-0.1
+0.1
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 1.5 mM
-4.0
-0.1
+0.2
+0.2
N.D.
carbon source
p-Coumaric (C) 5 mM
-4.1
+0.2
+0.0
+0.2
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 1.5 mM
-3.6
+0.2
+0.2
-0.4
N.D.
carbon source
caffeic 2 mM (C)
-2.6
+0.5
-0.4
-1.0
N.D.
carbon source
p-Coumaric (C) 5 mM
-3.9
+0.2
+0.2
+0.3
N.D.
carbon source
Xanthosine (C)
-3.3
+0.8
-0.7
+0.0
N.D.
carbon source
NAG (C)
-2.5
+0.5
-0.1
-1.1
N.D.
stress
Betaine (C)(N); with TAPS; with chloride
-3.8
+0.4
+0.2
+0.1
N.D.
carbon source
L-Valine 10 mM (C)
-3.8
+0.2
+0.3
+0.3
N.D.
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