Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS19270 and PFLU_RS19275 are separated by 3 nucleotidesPFLU_RS19275 and PFLU_RS19280 are separated by 163 nucleotidesPFLU_RS19280 and PFLU_RS19285 are separated by 230 nucleotidesPFLU_RS19285 and PFLU_RS19290 are separated by 30 nucleotides PFLU_RS19270: PFLU_RS19270 - copper homeostasis periplasmic binding protein CopC, at 4,358,254 to 4,358,619 _RS19270 PFLU_RS19275: PFLU_RS19275 - copper homeostasis membrane protein CopD, at 4,358,623 to 4,359,480 _RS19275 PFLU_RS19280: PFLU_RS19280 - OprD family porin, at 4,359,644 to 4,360,906 _RS19280 PFLU_RS19285: PFLU_RS19285 - NAD(P)-dependent oxidoreductase, at 4,361,137 to 4,361,955 _RS19285 PFLU_RS19290: PFLU_RS19290 - SMP-30/gluconolactonase/LRE family protein, at 4,361,986 to 4,362,861 _RS19290
Group Condition PFLU_RS19270 PFLU_RS19275 PFLU_RS19280 PFLU_RS19285 PFLU_RS19290
carbon source D-Glucuronic 10 mM (C) -0.3 -0.1 +0.2 -4.0 -1.3
carbon source D-Glucuronic 10 mM (C) -0.1 +0.0 +0.3 -4.1 -1.3
carbon source D-Glucuronic 10 mM (C) -0.2 +0.4 +0.2 -4.1 -1.4
carbon source D-Galacturonic Acid (C) 5 mM +0.1 +0.1 +0.0 -3.2 -1.3
carbon source D-Glucuronic (C) +0.3 -0.4 +0.2 -3.3 -1.0
carbon source D-Glucuronic (C) -0.6 -0.3 +0.0 -2.6 -0.5
carbon source D-Glucuronic (C) +0.3 -0.6 +0.1 -2.9 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -1.4 -0.7 -0.1 +0.2
stress Betaine (C)(N); with TAPS; with chloride -0.9 -2.1 -0.0 -0.3 +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -1.9 -0.3 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -2.3 +0.0 -0.5 +0.4
carbon source acetate 30 mM (C) -0.4 -1.4 -0.2 -0.2 -0.3
no stress control Glycine betaine (C)(N); with TAPS -1.4 -0.9 -0.3 +0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 -2.8 +0.3 -0.2 +0.4
carbon source Phloretic Acid 2 mM (C) +0.2 -1.6 +0.1 -0.3 +0.1
carbon source L-Arabinose (C); with MOPS +0.3 -1.5 -0.1 +0.3 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.8 -0.7 +0.4 +0.2 -0.3
carbon source D,L-Malic Acid (C) +0.7 -0.5 -0.3 -0.6 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.5 +0.3 +0.7 -0.6
carbon source propionate (C) -0.5 +1.3 +0.1 -0.0 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.2 +1.4 +0.6 +0.2 -0.1
carbon source Xanthosine (C) +0.6 +0.8 +0.2 -0.5 +0.1
carbon source D-Xylose (C) -0.1 -0.3 +0.9 +0.7 +0.9
carbon source D-Xylose (C) +0.2 -0.2 +0.9 +0.6 +0.8
carbon source D-Xylose (C) -0.0 +0.3 +0.6 +0.7 +1.0
carbon source D-Xylose 10 mM (C) -0.3 -0.5 +1.1 +1.1 +1.3
carbon source D-Xylose 10 mM (C) +0.1 -0.7 +1.1 +1.2 +1.3
carbon source D-Xylose (C) +0.2 +0.7 +0.8 +0.9 +1.0
carbon source D-Xylose (C) +0.4 +0.7 +0.7 +1.0 +1.2
carbon source D-Xylose 10 mM (C) +0.1 +0.5 +1.1 +1.2 +1.5
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