Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS19085 and PFLU_RS19090 overlap by 11 nucleotidesPFLU_RS19090 and PFLU_RS19095 are separated by 57 nucleotidesPFLU_RS19095 and PFLU_RS19100 are separated by 212 nucleotidesPFLU_RS19100 and PFLU_RS19105 overlap by 4 nucleotides PFLU_RS19085: PFLU_RS19085 - cytochrome b, at 4,315,399 to 4,315,956 _RS19085 PFLU_RS19090: PFLU_RS19090 - pyridoxal-phosphate dependent enzyme, at 4,315,946 to 4,316,830 _RS19090 PFLU_RS19095: PFLU_RS19095 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 4,316,888 to 4,318,927 _RS19095 PFLU_RS19100: PFLU_RS19100 - carbon-nitrogen hydrolase family protein, at 4,319,140 to 4,320,270 _RS19100 PFLU_RS19105: PFLU_RS19105 - AraC family transcriptional regulator, at 4,320,267 to 4,321,295 _RS19105
Group Condition PFLU_RS19085 PFLU_RS19090 PFLU_RS19095 PFLU_RS19100 PFLU_RS19105
carbon source L-tyrosine 10 mM (C) -0.3 -0.0 -0.0 -1.9 +0.2
carbon source Quinic Acid (C) -0.3 -0.7 -0.1 -0.8 +0.2
carbon source 4-Guanidinobutyric (C) +0.0 -0.3 +0.1 -1.2 +0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.0 -1.4 -0.1 +0.3 +0.1
carbon source Phloretic Acid 2 mM (C) +0.1 -1.5 +0.2 +0.1 +0.1
carbon source Choline chloride 10 mM (C) -0.4 -0.7 +0.0 -0.1 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -1.2 +0.0 +0.5 +0.0
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 +0.5 +0.1 -0.7 -0.2
stress L-Glutamine (C)(N); with TAPS; with chloride -0.2 -0.9 -0.4 +0.8 +0.2
carbon source p-Coumaric (C) 5 mM -0.2 -0.5 -0.1 +0.5 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.3 -0.3 -0.5 +0.9 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.7 -0.4 +0.7 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.6 +0.4 -0.1 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -0.8 +0.5 +0.4 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.1 +0.4 -0.8 +0.6
carbon source L-Valine (C) +0.1 +0.9 -0.5 -0.1 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.2 -0.8 -0.0 +0.7 +0.2
carbon source L-Ornithine (C) +0.0 +0.5 -0.2 -0.3 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.3 -0.5 +0.7 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -1.1 +0.1 +0.9 +0.4
carbon source propionate 20 mM (C) -0.2 +0.3 -0.1 +1.0 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 +0.7 -0.3 +0.9 -0.4
carbon source Inosine (C) -0.1 +0.4 +0.3 +0.6 -0.2
carbon source propionate 20 mM (C) -0.3 +0.8 +0.2 +0.5 -0.0
carbon source L-Valine 10 mM (C) +0.1 +1.9 -0.2 -0.2 -0.0
carbon source Inosine (C) -0.4 +0.8 +0.5 +0.4 +0.2
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.6 +0.1 +0.1 +0.6
carbon source L-Valine 10 mM (C) -0.1 +3.0 +0.4 -0.9 -0.1
carbon source L-Valine (C) -0.3 +2.5 +0.5 -0.4 +0.4
carbon source L-Valine 10 mM (C) -0.1 +4.0 +0.1 -0.8 +0.1
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