Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS18855 and PFLU_RS18860 overlap by 4 nucleotidesPFLU_RS18860 and PFLU_RS18865 overlap by 4 nucleotidesPFLU_RS18865 and PFLU_RS18870 are separated by 24 nucleotidesPFLU_RS18870 and PFLU_RS18875 are separated by 530 nucleotides PFLU_RS18855: PFLU_RS18855 - Na+/H+ antiporter subunit E, at 4,263,543 to 4,264,031 _RS18855 PFLU_RS18860: PFLU_RS18860 - K+/H+ antiporter subunit F, at 4,264,028 to 4,264,306 _RS18860 PFLU_RS18865: PFLU_RS18865 - Na+/H+ antiporter subunit G, at 4,264,303 to 4,264,641 _RS18865 PFLU_RS18870: PFLU_RS18870 - hypothetical protein, at 4,264,666 to 4,265,232 _RS18870 PFLU_RS18875: PFLU_RS18875 - cysteine--tRNA ligase, at 4,265,763 to 4,267,151 _RS18875
Group Condition PFLU_RS18855 PFLU_RS18860 PFLU_RS18865 PFLU_RS18870 PFLU_RS18875
carbon source Inosine (C) N.D. -0.3 -2.7 -0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. -0.3 -2.4 +0.2 N.D.
carbon source propionate 20 mM (C) N.D. -0.5 -2.1 +0.1 N.D.
carbon source 4-Aminobutyric (C) N.D. +0.3 -2.3 -0.3 N.D.
pH Growth at pH7 and (C) D-Glucose N.D. +0.0 -1.8 -0.3 N.D.
carbon source NAG (C) N.D. -0.3 -1.6 -0.1 N.D.
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.5 -2.0 -0.5 N.D.
carbon source propionate 20 mM (C) N.D. +0.0 -1.7 -0.3 N.D.
temperature Growth at 25C N.D. +0.2 -1.8 -0.4 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.2 -1.8 -0.3 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.1 -1.8 +0.1 N.D.
no stress control Glycine betaine (C)(N); with TAPS N.D. +0.1 -2.2 +0.3 N.D.
carbon source Phloretic Acid 2 mM (C) N.D. -0.2 -1.0 -0.6 N.D.
no stress control Glycine betaine (C)(N); with MOPS N.D. -0.1 -1.3 -0.3 N.D.
carbon source Xanthosine 10 mM (C) N.D. -0.4 -1.0 -0.2 N.D.
no stress control Glucose (C) and nitrate (N); with MOPS N.D. -0.4 -1.3 +0.1 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -0.1 -1.3 -0.2 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.3 -1.1 -0.2 N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride N.D. -0.3 -1.5 +0.2 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.4 -1.7 -0.2 N.D.
carbon source D-Glucuronic (C) N.D. +0.2 -1.4 -0.2 N.D.
stress Betaine (C)(N); with TAPS; with chloride N.D. +0.2 -1.6 +0.3 N.D.
stress Betaine (C)(N); with TAPS; with chloride N.D. +0.3 -1.5 +0.1 N.D.
carbon source Inosine 10 mM (C) N.D. +0.3 -1.2 -0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +0.2 -1.6 +0.5 N.D.
carbon source Quinic Acid (C) N.D. +0.1 -1.5 +0.5 N.D.
carbon source m-Inositol (C) N.D. +0.2 -1.3 +0.3 N.D.
nitrogen source NAG (N); with MOPS N.D. -0.7 +0.9 +0.2 N.D.
carbon source Phloretic Acid 2 mM (C) N.D. -0.1 +1.3 +0.3 N.D.
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.3 +1.5 -0.2 N.D.
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