Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS18555 and PFLU_RS18560 are separated by 225 nucleotidesPFLU_RS18560 and PFLU_RS18565 are separated by 81 nucleotidesPFLU_RS18565 and PFLU_RS18570 are separated by 493 nucleotidesPFLU_RS18570 and PFLU_RS18575 are separated by 225 nucleotides PFLU_RS18555: PFLU_RS18555 - ATP-dependent Clp protease adapter ClpS, at 4,199,838 to 4,200,206 _RS18555 PFLU_RS18560: PFLU_RS18560 - cold shock domain-containing protein CspD, at 4,200,432 to 4,200,707 _RS18560 PFLU_RS18565: PFLU_RS18565 - NADP-dependent isocitrate dehydrogenase, at 4,200,789 to 4,202,045 _RS18565 PFLU_RS18570: PFLU_RS18570 - NADP-dependent isocitrate dehydrogenase, at 4,202,539 to 4,204,764 _RS18570 PFLU_RS18575: PFLU_RS18575 - NUDIX hydrolase, at 4,204,990 to 4,205,436 _RS18575
Group Condition PFLU_RS18555 PFLU_RS18560 PFLU_RS18565 PFLU_RS18570 PFLU_RS18575
carbon source NAG (C) -1.9 -0.1 -0.1 N.D. -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -1.1 -0.2 N.D. -0.5
stress Betaine (C)(N); with MOPS; with chloride -1.6 -0.5 -0.1 N.D. +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.3 -1.7 -0.1 N.D. -0.4
stress Betaine (C)(N); with MOPS; with chloride -0.9 -1.0 +0.2 N.D. -0.2
temperature shift Temperature shift 30_to_34 -1.5 -0.2 +0.1 N.D. -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -1.2 -0.1 N.D. -0.7
carbon source Phloretic Acid 2 mM (C) -0.7 -0.8 +0.2 N.D. +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 -1.6 -0.0 N.D. +0.3
carbon source L-Ornithine 10 mM (C) -1.6 +0.8 +0.1 N.D. +0.4
carbon source Phloretic Acid 2 mM (C) -1.0 +0.4 +0.0 N.D. +0.6
carbon source L-Valine (C) -0.8 +0.5 +0.4 N.D. +0.2
carbon source D-Glucose (C); with MOPS +1.4 -0.6 +0.0 N.D. +0.1
stress malate (C) and Ammonium chloride (N); with TAPS +1.7 -0.2 -0.1 N.D. -0.2
no stress control Growth with no stress; with MOPS +1.8 -0.5 +0.2 N.D. +0.1
pH Growth at pH6 and (C) D-Glucose +1.8 -0.5 +0.1 N.D. +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.6 -0.2 +0.0 N.D. +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +2.0 -0.0 -0.1 N.D. -0.0
no stress control Growth with no stress; with MOPS +2.0 -0.2 +0.0 N.D. -0.0
carbon source p-Coumaric (C) 5 mM +1.9 +0.1 +0.1 N.D. -0.0
pH Growth at pH7 and (C) D-Glucose +1.7 +0.5 -0.0 N.D. -0.2
stress malate (C) and Ammonium chloride (N); with MOPS; with PEG +1.5 +0.2 +0.0 N.D. +0.3
carbon source p-Coumaric (C) 5 mM +2.1 -0.1 +0.0 N.D. +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.9 -0.0 +0.1 N.D. +0.2
carbon source p-Coumaric (C) 5 mM +1.9 +0.5 +0.0 N.D. +0.3
carbon source p-Coumaric (C) 5 mM +2.0 +0.3 +0.3 N.D. +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +4.5 -0.8 +0.1 N.D. +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +4.2 -0.2 +0.1 N.D. +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +4.2 -0.3 +0.3 N.D. +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +4.5 +0.2 +0.3 N.D. +0.1
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