Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS18440 and PFLU_RS18445 overlap by 17 nucleotidesPFLU_RS18445 and PFLU_RS18450 are separated by 115 nucleotidesPFLU_RS18450 and PFLU_RS18455 are separated by 67 nucleotidesPFLU_RS18455 and PFLU_RS18460 are separated by 370 nucleotides PFLU_RS18440: PFLU_RS18440 - NAD(P)H:quinone oxidoreductase, at 4,178,274 to 4,178,888 _RS18440 PFLU_RS18445: PFLU_RS18445 - DUF2069 domain-containing protein, at 4,178,872 to 4,179,291 _RS18445 PFLU_RS18450: PFLU_RS18450 - DNA-3-methyladenine glycosylase I, at 4,179,407 to 4,180,078 _RS18450 PFLU_RS18455: PFLU_RS18455 - tRNA 2-thiocytidine(32) synthetase TtcA, at 4,180,146 to 4,180,970 _RS18455 PFLU_RS18460: PFLU_RS18460 - YIP1 family protein, at 4,181,341 to 4,181,943 _RS18460
Group Condition PFLU_RS18440 PFLU_RS18445 PFLU_RS18450 PFLU_RS18455 PFLU_RS18460
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 +0.3 -1.7 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.4 -0.1 -0.6 -0.3 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 -0.3 -1.3 -0.2 -0.4
carbon source Inosine (C) -0.8 -0.0 -0.8 -0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.6 +0.3 -0.0 -0.1 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.3 -1.0 -0.1 -0.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.3 +0.2 -0.4 -0.3 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.1 -1.1 -0.7 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 +0.2 -0.5 -0.6 -0.1
carbon source m-Inositol (C) -1.6 +0.2 -0.5 +0.1 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.1 -1.0 -0.5 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.5 -0.8 -0.5 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 +0.3 +0.2 -0.7 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.4 +0.1 +0.6 -0.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 +0.2 -0.2 +0.0 +0.4
carbon source acetate 30 mM (C) +0.3 -0.2 -1.4 +0.1 +0.2
nitrogen source NAG (N); with MOPS +0.3 +0.2 -1.5 +0.1 +0.2
carbon source L-Ornithine 10 mM (C) -1.3 +0.4 +0.2 -0.4 +0.4
carbon source L-Carnitine (C) -0.6 +0.2 +0.4 -0.7 -0.1
carbon source Xanthosine (C) -0.4 +0.5 -1.1 +0.3 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.8 +0.1 +0.7 +0.3 -0.0
carbon source caffeic 2 mM (C) -0.2 +0.2 -1.1 -0.1 +0.7
carbon source Phloretic Acid 2 mM (C) +0.8 -0.1 -1.3 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.0 +0.5 -0.3 -0.9
carbon source p-Coumaric (C) 5 mM -1.0 -0.1 +0.8 +0.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 +0.2 +0.9 -0.1 -0.9
pH Growth at pH9 and (C) D-Glucose -0.8 +0.5 +0.8 -0.9 +0.3
nitrogen source NAG (N); with MOPS +0.2 +0.4 +0.9 -0.6 +0.1
stress Growth with Chloride 200 mM; with MOPS +0.3 +0.5 +0.7 -0.6 +0.2
carbon source NAG (C) +0.1 +0.3 +0.7 -0.4 +0.4
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