Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS18325 and PFLU_RS30895 are separated by 313 nucleotidesPFLU_RS30895 and PFLU_RS18330 are separated by 720 nucleotidesPFLU_RS18330 and PFLU_RS30900 are separated by 349 nucleotidesPFLU_RS30900 and PFLU_RS18335 are separated by 219 nucleotides PFLU_RS18325: PFLU_RS18325 - sensor domain-containing diguanylate cyclase, at 4,156,488 to 4,157,360 _RS18325 PFLU_RS30895: PFLU_RS30895 - hypothetical protein, at 4,157,674 to 4,157,973 _RS30895 PFLU_RS18330: PFLU_RS18330 - AraC family transcriptional regulator, at 4,158,694 to 4,159,563 _RS18330 PFLU_RS30900: PFLU_RS30900 - hypothetical protein, at 4,159,913 to 4,160,437 _RS30900 PFLU_RS18335: PFLU_RS18335 - hypothetical protein, at 4,160,657 to 4,160,986 _RS18335
Group Condition PFLU_RS18325 PFLU_RS30895 PFLU_RS18330 PFLU_RS30900 PFLU_RS18335
carbon source Phloretic Acid 2 mM (C) -0.5 -0.2 -0.1 -3.9 -0.2
pH Growth at pH7 and (C) D-Glucose +0.0 -0.1 +0.1 -3.9 -0.2
carbon source Choline chloride 10 mM (C) +0.1 -0.2 -0.4 -2.8 -0.5
pH Growth at pH7 and (C) D-Glucose -0.1 -0.4 +0.2 -3.7 +0.1
nitrogen source NAG (N); with MOPS -0.0 +0.0 -0.4 -3.5 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.3 +0.0 -2.9 -0.5
no stress control Glucose (C) and L-Glutamine (N); with MOPS -0.2 +0.0 -0.2 -3.0 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.1 -0.3 -3.3 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 -0.2 +0.5 -3.6 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.1 +0.5 -3.5 -0.3
carbon source D-Fructose (C) +0.1 +0.1 -0.2 -3.2 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.1 -0.4 +0.2 -2.4 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.3 -0.1 -2.9 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.1 -0.2 -3.0 -0.2
carbon source D-Fructose (C) +0.1 -0.4 +0.2 -2.8 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 -0.0 +0.1 -3.5 +0.0
carbon source acetate (C) +0.4 -0.0 +0.0 -3.2 -0.3
carbon source L-Ornithine 10 mM (C) -0.3 +0.0 -0.3 -2.5 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 -0.3 +0.1 -2.6 -0.5
carbon source Shikimic Acid (C) -0.3 +0.5 -0.1 -2.4 -0.6
stress Betaine (C)(N); with TAPS; with chloride +0.6 +0.1 +0.1 -3.6 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.0 +0.1 -2.7 -0.1
nitrogen source nitrate (N); with MOPS +0.1 -0.5 -0.3 -2.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.7 +0.1 -2.5 +0.2
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -0.0 +0.1 -2.1 -0.5
carbon source Glycerol (C) +0.2 +0.2 +0.1 -2.4 -0.2
no stress control Glucose (C) and Betaine (N); with MOPS -0.2 +0.1 +0.0 -2.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.4 +0.2 +2.2 -0.0
carbon source Shikimic Acid (C) +0.1 -0.5 +0.4 +2.6 +0.0
carbon source L-Valine (C) +0.3 -0.1 -0.0 +2.8 +0.9
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