Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS18100 and PFLU_RS18105 are separated by 145 nucleotidesPFLU_RS18105 and PFLU_RS18110 are separated by 170 nucleotidesPFLU_RS18110 and PFLU_RS18115 are separated by 109 nucleotidesPFLU_RS18115 and PFLU_RS18120 are separated by 10 nucleotides PFLU_RS18100: PFLU_RS18100 - pirin family protein, at 4,108,853 to 4,109,575 _RS18100 PFLU_RS18105: PFLU_RS18105 - hypothetical protein, at 4,109,721 to 4,110,107 _RS18105 PFLU_RS18110: PFLU_RS18110 - GlxA family transcriptional regulator, at 4,110,278 to 4,111,237 _RS18110 PFLU_RS18115: PFLU_RS18115 - thioesterase, at 4,111,347 to 4,111,889 _RS18115 PFLU_RS18120: PFLU_RS18120 - DeoR family transcriptional regulator, at 4,111,900 to 4,112,100 _RS18120
Group Condition PFLU_RS18100 PFLU_RS18105 PFLU_RS18110 PFLU_RS18115 PFLU_RS18120
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.0 N.D. -0.4 -0.8 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 N.D. -0.2 -0.9 -1.5
carbon source Xanthosine (C) +0.0 N.D. +0.0 -0.9 -1.5
stress Betaine (C)(N); with TAPS; with chloride -0.3 N.D. +0.2 -1.3 -0.8
carbon source m-Inositol (C) +0.1 N.D. -1.1 -0.8 -0.3
carbon source 4-Aminobutyric (C) -0.6 N.D. -0.7 -0.6 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 N.D. -0.2 -0.1 -2.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS +0.0 N.D. -0.3 -0.9 -0.8
carbon source p-Coumaric (C) 5 mM +0.1 N.D. -0.6 -0.3 -1.0
stress Betaine (C)(N); with TAPS; with chloride +0.2 N.D. -0.4 -0.3 -1.2
temperature shift Temperature shift 10_to_21; with MOPS -0.3 N.D. +0.2 +0.0 -1.5
stress Betaine (C)(N); with MOPS; with chloride -0.6 N.D. -1.0 -0.2 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 N.D. +0.2 -0.3 -1.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.3 N.D. -0.3 -0.7 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 N.D. +0.3 -0.3 -1.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 N.D. +0.5 -1.2 -0.6
carbon source Choline chloride 10 mM (C) -0.1 N.D. +0.6 -0.9 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 N.D. -0.9 -0.1 +0.7
carbon source L-Arabinose (C); with MOPS +0.4 N.D. -0.3 -0.3 -1.0
carbon source acetate (C) +0.1 N.D. +0.5 -1.0 -0.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.3 N.D. -0.8 -0.8 +0.9
stress Betaine (C)(N); with MOPS; with chloride +0.8 N.D. +0.2 -0.6 -0.9
temperature Growth at 25C +0.3 N.D. +0.6 -1.1 -0.2
carbon source Xanthosine (C) +0.8 N.D. -0.1 -0.2 -0.9
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.4 N.D. +0.3 -0.9 +0.6
carbon source Xanthosine (C) +0.7 N.D. -0.4 +0.7 -1.2
stress Betaine (C)(N); with MOPS; with chloride +0.4 N.D. +0.2 +0.6 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 N.D. -0.1 +1.0 +0.6
carbon source L-Carnitine (C) +0.5 N.D. +0.4 +0.6 +0.5
pH Growth at pH9 and (C) Trisodium citrate +0.5 N.D. +0.6 +0.8 +0.4
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