Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17785 and PFLU_RS17790 are separated by 8 nucleotidesPFLU_RS17790 and PFLU_RS17795 are separated by 265 nucleotidesPFLU_RS17795 and PFLU_RS17800 are separated by 48 nucleotidesPFLU_RS17800 and PFLU_RS17805 are separated by 82 nucleotides PFLU_RS17785: PFLU_RS17785 - hypothetical protein, at 4,040,272 to 4,040,652 _RS17785 PFLU_RS17790: PFLU_RS17790 - hypothetical protein, at 4,040,661 to 4,041,078 _RS17790 PFLU_RS17795: PFLU_RS17795 - M20/M25/M40 family metallo-hydrolase, at 4,041,344 to 4,042,573 _RS17795 PFLU_RS17800: PFLU_RS17800 - diguanylate cyclase, at 4,042,622 to 4,043,680 _RS17800 PFLU_RS17805: PFLU_RS17805 - LysE family translocator, at 4,043,763 to 4,044,395 _RS17805
Group Condition PFLU_RS17785 PFLU_RS17790 PFLU_RS17795 PFLU_RS17800 PFLU_RS17805
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.2 -0.7 +0.4 -0.4 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.2 -0.4 -0.6 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 -0.0 +0.1 -0.7 -0.2
carbon source NAG (C) -0.6 +0.1 -0.5 -0.6 -0.0
pH Growth at pH9 and (C) Trisodium citrate -0.8 -0.4 -0.3 -0.3 +0.3
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.1 +0.1 -1.0 -0.2
carbon source L-Lysine (C) -0.7 +0.1 +0.2 -0.8 -0.2
stress Betaine (C)(N); with MOPS; with chloride -0.2 -0.1 +0.4 -0.5 -0.9
carbon source Shikimic Acid (C) +0.2 -0.3 -0.7 +0.1 -0.5
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -0.4 +0.1 -0.3 -0.8 +0.3
no stress control L-Glutamine (C)(N); with TAPS -0.4 -0.5 -0.2 +0.4 -0.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.2 -0.7 -0.1 -0.4 +0.4
stress Betaine (C)(N); with TAPS; with chloride -0.7 -0.0 +0.8 -0.9 -0.1
nitrogen source nitrate (N); with MOPS +0.2 -0.2 -0.6 -0.6 +0.3
carbon source L-Carnitine (C) -0.6 -0.2 +0.2 -0.6 +0.4
carbon source Inosine (C) -1.1 -0.3 +0.9 -0.4 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.1 -0.7 +0.5 -0.6
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 -0.6 +0.3 -0.3 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.3 -0.5 +0.6 +0.1
nitrogen source NAG (N); with MOPS -0.7 -0.4 +0.3 -0.2 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.1 +0.5 -0.7 -0.4
carbon source L-Ornithine 10 mM (C) -0.9 +0.2 +0.4 +0.2 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.4 +0.2 +0.7 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 +0.3 +0.2 -0.2 +0.5
carbon source Quinic Acid (C) -0.2 -0.2 +0.8 -0.4 +0.3
no stress control Glycine betaine (C)(N); with MOPS -0.3 -0.5 +0.6 +1.2 -0.3
carbon source p-Coumaric 2 mM (C) +0.7 +0.2 +0.1 -0.5 +0.5
carbon source Phloretic Acid 2 mM (C) +0.3 +0.3 +0.4 -0.4 +0.5
carbon source Ferulic Acid (C) 1.5 mM +0.4 +0.4 +0.2 +0.5 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.7 -0.1 +0.8 +0.1 -0.4
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