Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17710 and PFLU_RS17715 are separated by 97 nucleotidesPFLU_RS17715 and PFLU_RS17720 are separated by 188 nucleotidesPFLU_RS17720 and PFLU_RS17725 overlap by 59 nucleotidesPFLU_RS17725 and PFLU_RS17730 are separated by 239 nucleotides PFLU_RS17710: PFLU_RS17710 - DUF4880 domain-containing protein, at 4,020,285 to 4,021,235 _RS17710 PFLU_RS17715: PFLU_RS17715 - TonB-dependent siderophore receptor, at 4,021,333 to 4,023,795 _RS17715 PFLU_RS17720: PFLU_RS17720 - AraC family transcriptional regulator, at 4,023,984 to 4,024,877 _RS17720 PFLU_RS17725: PFLU_RS17725 - LysE family translocator, at 4,024,819 to 4,025,406 _RS17725 PFLU_RS17730: PFLU_RS17730 - alpha/beta hydrolase, at 4,025,646 to 4,026,488 _RS17730
Group Condition PFLU_RS17710 PFLU_RS17715 PFLU_RS17720 PFLU_RS17725 PFLU_RS17730
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.7 -0.1 -0.1 -1.0 -0.2
temperature shift Temperature shift 10_to_25; with MOPS -0.8 +0.1 +0.1 -1.1 -0.4
carbon source p-Coumaric (C) 5 mM -0.7 +0.0 +0.1 -0.6 -0.3
carbon source acetate 30 mM (C) -0.5 -0.2 -0.5 -0.3 -0.0
carbon source Xanthosine (C) -0.7 -0.0 -0.1 -0.5 +0.0
carbon source Xanthosine (C) -0.4 -0.1 -0.2 -0.7 +0.1
carbon source 4-Guanidinobutyric (C) -0.3 -0.0 -0.1 -0.5 -0.3
carbon source L-Valine (C) -0.2 +0.1 -0.1 -0.8 -0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.9 -0.2 +0.0 -0.1 +0.1
carbon source Inosine (C) -0.5 +0.1 +0.2 -0.4 -0.5
carbon source Inosine (C) +0.1 +0.1 +0.0 -1.2 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.6 +0.1 -0.1 -0.7 +0.3
temperature Growth at 30C +0.4 -0.1 -0.2 -0.7 -0.2
temperature Growth at 25C -0.1 -0.2 +0.2 -0.7 +0.1
pH Growth at pH7 and (C) D-Glucose -0.4 -0.0 +0.3 -0.3 +0.3
carbon source L-Valine 10 mM (C) +0.4 -0.1 +0.1 -0.8 +0.3
carbon source L-Lysine (C) -0.5 +0.2 +0.2 -0.3 +0.3
stress Betaine (C)(N); with TAPS; with chloride -0.3 -0.2 +0.4 +0.3 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 +0.0 -0.2 -0.6 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.3 +0.3 -0.5 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.7 +0.0 +0.2 +0.4 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 +0.0 -0.0 +0.3 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.1 +0.2 +0.2 +0.5
carbon source Guanosine 10 mM (C) +0.2 -0.1 +0.3 +0.4 -0.3
carbon source L-Carnitine (C) -0.4 +0.0 +0.4 +0.5 +0.1
carbon source Xanthosine (C) +0.6 +0.0 +0.1 +0.3 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.2 +0.0 +0.6 +0.3
no stress control Glucose (C) and Betaine (N); with MOPS +0.4 -0.1 -0.0 +0.5 +0.4
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.1 +0.1 +0.0 +0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 +0.1 -0.1 +0.7 +0.1
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