Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17650 and PFLU_RS17655 are separated by 336 nucleotidesPFLU_RS17655 and PFLU_RS17660 are separated by 62 nucleotidesPFLU_RS17660 and PFLU_RS17665 are separated by 164 nucleotidesPFLU_RS17665 and PFLU_RS17670 overlap by 1 nucleotides PFLU_RS17650: PFLU_RS17650 - coproporphyrinogen III oxidase, at 4,012,531 to 4,013,793 _RS17650 PFLU_RS17655: PFLU_RS17655 - putative natural product biosynthesis protein, at 4,014,130 to 4,014,675 _RS17655 PFLU_RS17660: PFLU_RS17660 - DUF2946 domain-containing protein, at 4,014,738 to 4,015,121 _RS17660 PFLU_RS17665: PFLU_RS17665 - SCO family protein, at 4,015,286 to 4,015,894 _RS17665 PFLU_RS17670: PFLU_RS17670 - copper chaperone PCu(A)C, at 4,015,894 to 4,016,361 _RS17670
Group Condition PFLU_RS17650 PFLU_RS17655 PFLU_RS17660 PFLU_RS17665 PFLU_RS17670
temperature shift Temperature shift 10_to_25; with MOPS +0.1 -0.7 -2.0 +0.0 N.D.
no stress control Glycine betaine (C)(N); with MOPS +0.1 -0.3 -2.2 +0.1 N.D.
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.7 -0.1 -0.9 -0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.7 -1.1 -0.1 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.3 -2.3 +0.3 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.6 -0.8 -0.6 +0.4 N.D.
carbon source D-Xylose (C) -0.0 +0.3 -1.5 -0.2 N.D.
carbon source Phloretic Acid 2 mM (C) -0.2 +0.5 -1.8 +0.2 N.D.
nitrogen source nitrate (N); with MOPS +0.4 -0.7 -0.7 -0.3 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -1.0 -0.2 -0.5 N.D.
carbon source NAG (C) -0.2 -0.3 -1.0 +0.3 N.D.
nitrogen source Urea (N) +0.2 -0.4 -1.3 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 +0.3 -1.2 -0.3 N.D.
nitrogen source nitrate (N); with MOPS -0.2 -0.2 -1.2 +0.5 N.D.
pH Growth at pH6 and (C) D-Glucose +0.0 +0.1 -1.5 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.4 -0.8 -0.5 N.D.
carbon source m-Inositol (C) -0.6 +0.2 +0.3 -0.8 N.D.
pH Growth at pH7 and (C) D-Glucose +0.5 +0.4 -0.5 -1.0 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.0 -1.1 +0.9 N.D.
carbon source Shikimic Acid (C) +0.3 -1.2 +0.6 -0.1 N.D.
carbon source 4-Aminobutyric (C) +0.1 +0.7 -0.6 -0.4 N.D.
carbon source L-Lysine (C) +0.4 +0.6 -1.5 +0.4 N.D.
carbon source L-Valine (C) +0.4 -0.4 -0.7 +0.6 N.D.
no stress control L-Glutamine (C)(N); with MOPS -0.2 +0.6 -0.7 +0.4 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.3 -0.5 +1.0 N.D.
carbon source Xanthosine (C) -0.8 +0.6 +0.8 +0.4 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.4 +0.9 +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.6 +1.1 -0.6 N.D.
pH Growth at pH8 and (C) Trisodium citrate +0.5 -0.1 +0.6 +0.7 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 -0.1 +0.5 +0.7 N.D.
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