Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17515 and PFLU_RS17520 are separated by 42 nucleotidesPFLU_RS17520 and PFLU_RS17525 are separated by 127 nucleotidesPFLU_RS17525 and PFLU_RS17530 are separated by 21 nucleotidesPFLU_RS17530 and PFLU_RS17535 are separated by 69 nucleotides PFLU_RS17515: PFLU_RS17515 - ribonuclease T2, at 3,978,408 to 3,979,037 _RS17515 PFLU_RS17520: PFLU_RS17520 - Gfo/Idh/MocA family oxidoreductase, at 3,979,080 to 3,980,060 _RS17520 PFLU_RS17525: PFLU_RS17525 - NUDIX domain-containing protein, at 3,980,188 to 3,980,550 _RS17525 PFLU_RS17530: PFLU_RS17530 - glucosidase, at 3,980,572 to 3,983,211 _RS17530 PFLU_RS17535: PFLU_RS17535 - outer membrane porin, OprD family, at 3,983,281 to 3,984,690 _RS17535
Group Condition PFLU_RS17515 PFLU_RS17520 PFLU_RS17525 PFLU_RS17530 PFLU_RS17535
carbon source Sucrose 5 mM (C) -0.6 -1.8 -2.2 -0.2 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.7 -0.0 -1.9 -0.0 -0.2
carbon source Phloretic Acid 2 mM (C) +0.3 -0.9 -2.4 +0.1 -0.3
nitrogen source Ammonium chloride (N); with MOPS -0.3 -0.3 -2.5 -0.1 +0.1
carbon source NAG (C) -1.6 -0.3 -0.8 -0.2 -0.1
carbon source L-Isoleucine (C) -0.3 -0.3 -1.7 -0.4 -0.2
carbon source L-Valine (C) -1.9 +0.3 -1.1 -0.1 -0.0
carbon source m-Inositol (C) -1.0 -0.4 -1.1 +0.0 -0.2
carbon and nitrogen source NAG carbon and (N) -1.1 +0.3 -1.8 -0.2 +0.0
carbon source NAG (C) -1.6 +0.5 -1.6 -0.0 -0.0
carbon source 4-Aminobutyric (C) +0.5 -0.4 -2.2 -0.1 -0.3
no stress control Glycine betaine (C)(N); with MOPS -0.9 +0.3 -0.9 -0.3 -0.5
carbon source Inosine (C) -3.1 -0.0 +0.6 +0.3 -0.0
stress Sucrose (C) and Ammonium chloride (N); with TAPS -0.3 +0.1 -2.2 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.1 -2.9 -0.2 +0.4
carbon source acetate 30 mM (C) -0.1 +0.2 -2.2 -0.2 +0.2
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -0.3 +0.3 -1.9 -0.1 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.3 -1.6 +0.1 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 +0.5 -1.2 -0.2 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.9 +0.8 -1.0 +0.2 -0.6
stress Betaine (C)(N); with TAPS; with chloride +0.1 +0.8 -2.1 -0.3 +0.3
stress Betaine (C)(N); with MOPS; with chloride +0.9 -0.7 -1.3 -0.1 -0.0
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -1.9 -0.1 +0.6 +0.3 +0.0
stress Glucose (C) and Betaine (N); with TAPS; with chloride +0.6 -0.6 -1.4 +0.2 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 +0.2 -2.0 +0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.7 -1.6 -0.1 +0.3
temperature Growth at 25C; with MOPS -1.4 +0.4 +1.0 -0.1 -0.2
carbon source Xanthosine (C) -0.2 -0.7 +1.6 -0.3 -0.1
carbon source Xanthosine (C) -1.7 +0.2 +2.2 +0.2 -0.3
carbon source Inosine (C) -0.1 +0.0 +3.0 +0.4 +0.2
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