Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17500 and PFLU_RS17505 are separated by 33 nucleotidesPFLU_RS17505 and PFLU_RS17510 are separated by 109 nucleotidesPFLU_RS17510 and PFLU_RS17515 overlap by 10 nucleotidesPFLU_RS17515 and PFLU_RS17520 are separated by 42 nucleotides PFLU_RS17500: PFLU_RS17500 - hypothetical protein, at 3,976,661 to 3,976,997 _RS17500 PFLU_RS17505: PFLU_RS17505 - hypothetical protein, at 3,977,031 to 3,977,441 _RS17505 PFLU_RS17510: PFLU_RS17510 - helix-turn-helix transcriptional regulator, at 3,977,551 to 3,978,417 _RS17510 PFLU_RS17515: PFLU_RS17515 - ribonuclease T2, at 3,978,408 to 3,979,037 _RS17515 PFLU_RS17520: PFLU_RS17520 - Gfo/Idh/MocA family oxidoreductase, at 3,979,080 to 3,980,060 _RS17520
Group Condition PFLU_RS17500 PFLU_RS17505 PFLU_RS17510 PFLU_RS17515 PFLU_RS17520
carbon source Sucrose 5 mM (C) -1.4 -1.9 +0.2 -0.6 -1.8
carbon source Xanthosine (C) -1.2 -1.8 -0.5 -1.7 +0.2
pH Growth at pH9 and (C) Trisodium citrate -0.2 -0.8 -1.4 -0.4 -0.8
stress Betaine (C)(N); with MOPS; with chloride +0.8 -1.8 -1.4 -1.2 +0.2
carbon source L-Carnitine (C) -0.3 -2.3 +0.4 -0.1 -1.0
carbon source Inosine (C) -0.3 +0.7 -0.6 -3.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +0.6 -0.2 -2.3 -0.1
nitrogen source NAG (N); with MOPS +0.1 -1.6 -0.1 -1.4 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.1 -1.3 +0.3 -1.7 -0.0
carbon and nitrogen source NAG carbon and (N) -1.1 -0.3 -0.4 -1.1 +0.3
temperature shift Temperature shift 10_to_25; with MOPS -0.5 -0.6 +0.4 -0.5 -1.2
carbon source Inosine (C) +0.4 -2.0 -0.5 -0.1 +0.0
stress L-Glutamine (C)(N); with MOPS; with chloride -0.9 -1.9 +0.2 +0.4 +0.0
temperature Growth at 25C; with MOPS -0.1 -1.0 +0.1 -1.4 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.7 -0.2 -0.8 -1.2 -0.4
stress Betaine (C)(N); with MOPS; with chloride -0.5 -0.7 +0.3 -1.5 +0.5
stress Betaine (C)(N); with TAPS; with chloride +0.4 -1.3 -0.2 -1.0 +0.3
carbon source L-Valine (C) -1.3 -0.8 -0.3 +0.9 +0.0
no stress control L-Glutamine (C)(N); with MOPS -1.1 +0.8 +0.1 -1.0 -0.2
carbon source NAG (C) +0.2 +0.3 -0.6 -1.6 +0.5
carbon source L-Valine (C) -0.1 +0.9 -0.3 -1.9 +0.3
carbon source p-Coumaric 2 mM (C) -0.1 -1.5 +0.8 -0.5 +0.3
carbon source L-Carnitine (C) -1.0 +0.6 -0.3 +0.6 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 +0.4 -0.2 -0.4 +0.9
stress Betaine (C)(N); with MOPS; with chloride +1.3 -1.5 -0.9 -0.1 +0.7
stress Sucrose (C) and L-Glutamine (N); with MOPS; with PEG +0.5 -1.2 +0.4 +0.2 -0.6
stress Betaine (C)(N); with MOPS; with chloride +1.1 -1.8 +0.3 +0.9 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.3 +0.6 -1.4 +0.7
carbon source L-Carnitine (C) -2.1 +1.4 +0.1 -0.1 +0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.8 +0.4 +1.0 -0.9
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