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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS17150 and PFLU_RS17155 are separated by 156 nucleotides
PFLU_RS17155 and PFLU_RS17160 overlap by 14 nucleotides
PFLU_RS17160 and PFLU_RS17165 are separated by 141 nucleotides
PFLU_RS17165 and PFLU_RS17170 are separated by 45 nucleotides
PFLU_RS17150: PFLU_RS17150 - hypothetical protein, at 3,894,099 to 3,894,278
_RS17150
PFLU_RS17155: PFLU_RS17155 - lactonase family protein, at 3,894,435 to 3,895,610
_RS17155
PFLU_RS17160: PFLU_RS17160 - hypothetical protein, at 3,895,597 to 3,895,884
_RS17160
PFLU_RS17165: PFLU_RS17165 - hypothetical protein, at 3,896,026 to 3,900,924
_RS17165
PFLU_RS17170: PFLU_RS17170 - RND family transporter, at 3,900,970 to 3,903,345
_RS17170
Group
Condition
PFLU
_RS17150
PFLU
_RS17155
PFLU
_RS17160
PFLU
_RS17165
PFLU
_RS17170
stress
L-Glutamine (C)(N); with TAPS; with chloride
+0.2
-0.6
-3.9
+0.1
-0.4
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-0.7
-0.3
-2.4
-0.1
+0.1
carbon source
L-Valine (C)
-0.0
+0.4
-3.4
+0.0
-0.5
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
-2.8
+0.6
-1.2
+0.0
-0.0
carbon and nitrogen source
NAG carbon and (N)
-0.8
-0.4
-1.8
-0.0
-0.3
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-1.4
-0.9
-1.2
+0.1
+0.1
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-0.3
-0.4
-1.9
-0.1
-0.5
stress
Betaine (C)(N); with TAPS; with chloride
-0.3
-0.1
-2.5
+0.1
-0.1
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-1.3
-0.9
-0.4
-0.1
-0.3
carbon source
Quinic Acid (C)
+0.3
-0.8
-2.4
-0.1
+0.0
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-2.6
+0.1
-0.3
+0.2
-0.2
carbon source
caffeic 2 mM (C)
-1.1
-0.2
-1.1
-0.0
-0.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.2
-1.0
-1.3
+0.0
-0.3
carbon source
L-Arabinose (C); with MOPS
-0.6
-0.3
-1.2
-0.1
-0.4
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
-1.0
+0.1
-1.0
+0.0
-0.5
stress
Betaine (C)(N); with TAPS; with chloride
-1.1
+0.1
-1.3
-0.2
+0.0
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
+0.6
-0.6
-1.7
-0.3
-0.2
carbon source
L-Carnitine (C)
-0.6
-0.1
-1.7
+0.2
-0.1
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
+0.4
+0.2
-2.5
-0.0
-0.1
carbon source
D-Glucuronic (C)
+0.3
-0.1
-2.0
-0.2
+0.1
stress
Betaine (C)(N); with MOPS; with chloride
-0.3
+0.5
-1.4
-0.1
-0.4
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-1.0
-0.6
+0.8
+0.0
-0.3
pH
Growth at pH9 and (C) Trisodium citrate
-1.1
-1.0
+0.3
+0.2
+0.3
carbon source
Phloretic Acid 2 mM (C)
-1.3
-0.3
+0.8
-0.1
-0.2
carbon source
Phloretic Acid 2 mM (C)
-0.2
-0.7
+0.9
-0.0
-0.9
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.9
-0.8
-0.4
+0.2
-0.4
carbon source
D-Glucose (C) 3 mM
-0.4
-1.2
+0.9
+0.3
+0.1
carbon source
D-Glucosamine Hydrochloride 10 mM (C)
-1.0
-0.4
+1.3
+0.0
+0.1
carbon source
4-Aminobutyric (C)
+0.5
+0.5
-1.3
+0.2
+0.1
stress
Betaine (C)(N); with MOPS; with chloride
+0.2
+0.6
+1.9
+0.2
-0.2
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