Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS17095 and PFLU_RS17100 are separated by 493 nucleotidesPFLU_RS17100 and PFLU_RS17105 are separated by 310 nucleotidesPFLU_RS17105 and PFLU_RS17110 are separated by 5 nucleotidesPFLU_RS17110 and PFLU_RS17115 overlap by 4 nucleotides PFLU_RS17095: PFLU_RS17095 - NAD-glutamate dehydrogenase, at 3,875,071 to 3,879,930 _RS17095 PFLU_RS17100: PFLU_RS17100 - hypothetical protein, at 3,880,424 to 3,880,777 _RS17100 PFLU_RS17105: PFLU_RS17105 - MoxR family ATPase, at 3,881,088 to 3,882,047 _RS17105 PFLU_RS17110: PFLU_RS17110 - DUF58 domain-containing protein, at 3,882,053 to 3,882,985 _RS17110 PFLU_RS17115: PFLU_RS17115 - DUF4381 domain-containing protein, at 3,882,982 to 3,883,476 _RS17115
Group Condition PFLU_RS17095 PFLU_RS17100 PFLU_RS17105 PFLU_RS17110 PFLU_RS17115
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.1 N.D. -1.2 -3.1 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 N.D. -1.4 -2.1 -1.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 N.D. -1.3 -1.6 -1.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.3 N.D. -2.4 -0.4 -0.7
carbon source p-Coumaric (C) 5 mM +0.4 N.D. -1.2 -1.7 -2.0
carbon source p-Coumaric (C) 5 mM +0.4 N.D. -1.4 -1.6 -1.7
carbon source propionate 20 mM (C) -0.8 N.D. +1.9 +1.8 +1.2
carbon source propionate 20 mM (C) -0.6 N.D. +1.8 +1.3 +1.9
carbon source propionate 20 mM (C) -0.9 N.D. +2.0 +1.7 +1.6
carbon source acetate (C) +0.5 N.D. +1.5 +1.4 +1.4
temperature shift Temperature shift 30_to_34 +0.4 N.D. +1.8 +1.2 +1.5
carbon source Vanillic Acid (C) +1.0 N.D. +1.7 +1.1 +1.3
carbon source L-Arabinose (C) +0.3 N.D. +1.7 +1.8 +1.3
carbon source 4-Aminobutyric (C) +0.6 N.D. +1.6 +1.3 +1.7
pH Growth at pH9 and (C) Trisodium citrate +0.4 N.D. +2.2 +1.1 +1.5
carbon source D-Mannitol (C) +0.7 N.D. +1.4 +1.6 +1.6
carbon source acetate 30 mM (C) +0.1 N.D. +1.6 +2.0 +1.6
carbon source acetate (C) +0.5 N.D. +1.8 +1.6 +1.5
carbon source m-Inositol (C) +1.0 N.D. +1.6 +1.3 +1.6
carbon source D-Mannitol (C) +0.8 N.D. +1.6 +1.7 +1.4
carbon source NAG (C) +0.4 N.D. +2.2 +1.3 +1.6
carbon source acetate 30 mM (C) -0.1 N.D. +2.1 +1.8 +1.8
carbon source 4-Aminobutyric (C) +1.0 N.D. +1.4 +1.6 +1.6
temperature shift Temperature shift 30_to_34 +0.5 N.D. +2.1 +1.6 +1.7
carbon and nitrogen source NAG carbon and (N) +0.7 N.D. +2.1 +1.3 +2.0
carbon source NAG (C) +0.2 N.D. +2.3 +1.9 +1.7
carbon and nitrogen source NAG carbon and (N) +0.7 N.D. +2.1 +1.8 +1.7
carbon and nitrogen source NAG carbon and (N) +0.6 N.D. +2.0 +1.8 +2.0
carbon source NAG (C) +0.3 N.D. +2.2 +2.2 +1.9
pH Growth at pH9 and (C) D-Glucose +0.0 N.D. +2.6 +2.5 +2.1
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