Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS16935 and PFLU_RS16940 are separated by 29 nucleotidesPFLU_RS16940 and PFLU_RS16945 are separated by 9 nucleotidesPFLU_RS16945 and PFLU_RS16950 are separated by 10 nucleotidesPFLU_RS16950 and PFLU_RS16955 are separated by 42 nucleotides PFLU_RS16935: PFLU_RS16935 - CoA ester lyase, at 3,839,045 to 3,839,857 _RS16935 PFLU_RS16940: PFLU_RS16940 - CoA transferase, at 3,839,887 to 3,841,080 _RS16940 PFLU_RS16945: PFLU_RS16945 - MmgE/PrpD family protein, at 3,841,090 to 3,842,439 _RS16945 PFLU_RS16950: PFLU_RS16950 - acyl-CoA/acyl-ACP dehydrogenase, at 3,842,450 to 3,843,613 _RS16950 PFLU_RS16955: PFLU_RS16955 - hypothetical protein, at 3,843,656 to 3,844,474 _RS16955
Group Condition PFLU_RS16935 PFLU_RS16940 PFLU_RS16945 PFLU_RS16950 PFLU_RS16955
carbon source Itaconic Acid 20 mM (C) -4.0 -4.3 -4.3 -3.9 -5.0
carbon source Itaconic Acid 20 mM (C) -3.5 -4.7 -4.8 -4.0 -4.0
carbon source Itaconic Acid 20 mM (C) -4.2 -4.4 -4.3 -3.9 -4.1
carbon source NAG (C) -3.4 -2.2 -0.7 -0.1 -0.7
carbon and nitrogen source NAG carbon and (N) -4.4 -1.8 +0.1 -0.3 +0.2
carbon source NAG (C) -3.2 -1.9 -0.6 -0.3 -0.2
carbon source NAG (C); with MOPS -3.7 -1.7 -0.7 +0.1 +0.2
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -3.5 -1.3 -0.1 -0.2 -0.4
carbon and nitrogen source NAG carbon and (N) -3.9 -1.6 +0.1 +0.1 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -4.1 -0.2 -0.2 -0.1 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -2.6 -0.3 -0.9 -0.4 -0.7
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.9 -1.2 +0.0 -0.3 -0.4
carbon source Phloretic Acid 2 mM (C) -2.6 -1.2 -0.5 +0.3 -0.6
carbon source NAG (C) -3.9 -0.8 -0.1 +0.1 -0.0
carbon and nitrogen source NAG carbon and (N) -2.1 -1.5 -0.3 +0.1 -0.7
carbon source L-Ornithine 10 mM (C) -3.2 -0.7 -0.1 -0.2 -0.3
carbon source NAG (C) -2.7 -1.9 -0.0 -0.2 +0.3
carbon source NAG (C) -3.0 -1.5 -0.2 +0.1 +0.2
carbon source NAG (C); with MOPS -2.2 -1.7 -0.5 +0.0 +0.1
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -1.8 -1.5 +0.2 -0.2 -0.6
stress Betaine (C)(N); with TAPS; with chloride -2.7 -0.2 -0.6 -0.4 -0.1
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -2.2 -1.1 -0.2 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.5 -0.2 -0.2 -0.6 -0.4
carbon source Phloretic Acid 2 mM (C) -2.1 -1.7 -0.4 +0.3 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -1.0 -0.3 -0.2 -0.8
carbon source L-Ornithine 10 mM (C) -2.2 -0.6 -0.3 +0.2 -0.7
carbon source L-Ornithine 10 mM (C) -2.8 -1.1 +0.2 -0.0 +0.1
carbon source NAG (C) 10 mM -2.6 -0.9 +0.4 -0.1 -0.1
carbon source NAG (C) 10 mM -2.3 -0.9 -0.1 -0.2 +0.2
carbon source propionate 20 mM (C) +1.4 -0.3 -1.0 -0.5 +0.6
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