Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS16810 and PFLU_RS16815 are separated by 0 nucleotidesPFLU_RS16815 and PFLU_RS16820 are separated by 98 nucleotidesPFLU_RS16820 and PFLU_RS16825 are separated by 130 nucleotidesPFLU_RS16825 and PFLU_RS16830 are separated by 129 nucleotides PFLU_RS16810: PFLU_RS16810 - EAL domain-containing protein, at 3,812,739 to 3,815,312 _RS16810 PFLU_RS16815: PFLU_RS16815 - helix-turn-helix transcriptional regulator, at 3,815,313 to 3,816,134 _RS16815 PFLU_RS16820: PFLU_RS16820 - MFS transporter, at 3,816,233 to 3,817,444 _RS16820 PFLU_RS16825: PFLU_RS16825 - sensor histidine kinase, at 3,817,575 to 3,818,699 _RS16825 PFLU_RS16830: PFLU_RS16830 - GGDEF domain-containing protein, at 3,818,829 to 3,819,995 _RS16830
Group Condition PFLU_RS16810 PFLU_RS16815 PFLU_RS16820 PFLU_RS16825 PFLU_RS16830
carbon source 4-Guanidinobutyric (C) -0.5 -1.5 -0.3 -0.6 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -1.2 +0.1 -0.4 -1.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.8 -0.1 -1.1 +0.1
carbon source L-Carnitine (C) +0.2 -0.0 -0.2 -1.5 -0.5
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.0 -0.5 -0.9 -0.3
carbon source p-Coumaric 2 mM (C) -0.2 -0.3 +0.1 -0.6 -0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.9 -0.4 -0.1 +0.1
carbon source Choline chloride 10 mM (C) +0.1 -0.5 -0.6 -0.2 -0.1
carbon source Xanthosine (C) +0.0 -0.7 +0.2 -0.5 -0.4
carbon source caffeic 2 mM (C) +0.2 -0.9 -0.4 +0.2 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -0.9 +0.2 -0.3 +0.2
carbon source L-Carnitine (C) +0.0 -1.0 +0.4 -0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.9 +0.6 +0.5 -0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 +0.4 -0.3 -0.6 -0.4
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.7 -0.6 +0.5 -0.0
stress Betaine (C)(N); with MOPS; with chloride -0.6 +0.9 +0.0 -1.1 +0.1
pH Growth at pH9 and (C) Trisodium citrate +0.5 +0.1 -0.3 -0.7 -0.2
carbon and nitrogen source NAG carbon and (N) +0.2 -0.7 +0.6 -0.5 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 -0.7 +0.2 +0.4 -0.5
carbon source Phloretic Acid 2 mM (C) -0.2 +0.6 -0.2 -0.4 -0.4
stress Betaine (C)(N); with TAPS; with chloride -0.3 +0.4 -0.4 -0.2 +0.6
carbon source 4-Aminobutyric (C) -0.3 +0.1 -0.7 +0.6 +0.5
no stress control Glycine betaine (C)(N); with TAPS +0.3 +0.4 -0.6 +0.5 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.4 +0.1 +0.1 +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 +0.7 +0.0 -0.3 +0.4
stress Betaine (C)(N); with TAPS; with chloride +0.1 +0.6 -0.2 +0.7 -0.2
stress L-Glutamine (C)(N); with TAPS; with chloride +0.2 +0.6 +0.2 -0.4 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 +0.8 -0.2 +0.5 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +1.0 -0.1 +0.3 +0.2
carbon source L-Valine (C) -0.1 +0.3 +0.0 +0.7 +1.1
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