Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS16120 and PFLU_RS16125 are separated by 193 nucleotidesPFLU_RS16125 and PFLU_RS16130 are separated by 40 nucleotidesPFLU_RS16130 and PFLU_RS16135 are separated by 115 nucleotidesPFLU_RS16135 and PFLU_RS16140 are separated by 241 nucleotides PFLU_RS16120: PFLU_RS16120 - TetR/AcrR family transcriptional regulator, at 3,663,282 to 3,663,893 _RS16120 PFLU_RS16125: PFLU_RS16125 - polyamine ABC transporter substrate-binding protein, at 3,664,087 to 3,665,190 _RS16125 PFLU_RS16130: PFLU_RS16130 - hypothetical protein, at 3,665,231 to 3,666,568 _RS16130 PFLU_RS16135: PFLU_RS16135 - serine hydrolase, at 3,666,684 to 3,667,946 _RS16135 PFLU_RS16140: PFLU_RS16140 - cysteine hydrolase, at 3,668,188 to 3,668,793 _RS16140
Group Condition PFLU_RS16120 PFLU_RS16125 PFLU_RS16130 PFLU_RS16135 PFLU_RS16140
carbon source p-Coumaric (C) 5 mM -2.8 +0.1 +0.1 -0.2 -0.2
no stress control Glycine betaine (C)(N); with TAPS -2.6 -0.0 -0.1 +0.3 -0.4
carbon source p-Coumaric (C) 5 mM -1.8 -0.0 -0.1 -0.1 -0.6
carbon source p-Coumaric (C) 5 mM -2.6 -0.1 +0.2 -0.1 +0.1
stress Betaine (C)(N); with TAPS; with chloride -1.9 -0.2 +0.2 -0.1 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG -1.9 -0.2 +0.0 -0.3 -0.0
carbon source octanoate 10 mM (C) -1.8 +0.0 +0.1 -0.2 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.2 -0.0 -0.4 -0.1 -0.8
carbon source 2-Deoxy-D-Ribose 10 mM (C) -2.0 -0.3 +0.3 -0.0 -0.3
carbon source p-Coumaric (C) 5 mM -2.2 -0.1 -0.0 -0.1 +0.1
stress Sucrose (C) and Ammonium chloride (N); with TAPS; with PEG -1.8 -0.1 -0.1 -0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.1 -0.3 -0.1 -0.2 -0.6
stress Betaine (C)(N); with MOPS; with chloride -1.5 -0.2 -0.5 +0.0 -0.1
carbon source Choline chloride 10 mM (C) -1.5 +0.1 +0.3 -0.5 -0.6
carbon source L-Carnitine (C) -1.5 -0.3 -0.2 -0.2 +0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.8 -0.2 -0.4 +0.3 -1.0
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -1.4 -0.2 +0.1 +0.0 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.1 -0.6 -0.2 -1.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -1.5 -0.4 -0.1 +0.0 +0.3
carbon source L-Carnitine (C) -1.1 -0.6 -0.2 +0.1 +0.3
carbon source Xanthosine (C) -1.9 +0.2 +0.2 +0.2 +0.2
carbon source m-Inositol (C) -0.8 +0.4 -0.3 +0.2 -0.6
carbon source m-Inositol (C) -2.0 +0.3 +0.1 +0.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 -0.0 -0.8 -0.2 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.4 -0.1 +0.5 +0.3 +0.7
stress Betaine (C)(N); with MOPS; with chloride +1.4 -0.3 +0.1 -0.2 -0.8
carbon source acetate 30 mM (C) -0.9 +0.1 +0.2 +0.2 +0.7
nitrogen source nitrate (N); with MOPS +0.9 +0.1 +0.5 -0.1 -1.2
pH Growth at pH9 and (C) Trisodium citrate +1.4 -0.5 -0.1 +0.4 -0.3
carbon source L-Valine (C) +1.4 -0.4 +0.2 +0.3 +0.3
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