Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS16110 and PFLU_RS16115 are separated by 269 nucleotidesPFLU_RS16115 and PFLU_RS16120 are separated by 98 nucleotidesPFLU_RS16120 and PFLU_RS16125 are separated by 193 nucleotidesPFLU_RS16125 and PFLU_RS16130 are separated by 40 nucleotides PFLU_RS16110: PFLU_RS16110 - benzaldehyde dehydrogenase, at 3,659,678 to 3,661,153 _RS16110 PFLU_RS16115: PFLU_RS16115 - sigma-54-dependent Fis family transcriptional regulator, at 3,661,423 to 3,663,183 _RS16115 PFLU_RS16120: PFLU_RS16120 - TetR/AcrR family transcriptional regulator, at 3,663,282 to 3,663,893 _RS16120 PFLU_RS16125: PFLU_RS16125 - polyamine ABC transporter substrate-binding protein, at 3,664,087 to 3,665,190 _RS16125 PFLU_RS16130: PFLU_RS16130 - hypothetical protein, at 3,665,231 to 3,666,568 _RS16130
Group Condition PFLU_RS16110 PFLU_RS16115 PFLU_RS16120 PFLU_RS16125 PFLU_RS16130
carbon source p-Coumaric (C) 5 mM -1.4 +0.1 -2.2 -0.1 -0.0
carbon source p-Coumaric (C) 5 mM -0.5 -0.6 -2.6 -0.1 +0.2
no stress control Glycine betaine (C)(N); with TAPS -0.0 -0.6 -2.6 -0.0 -0.1
carbon source p-Coumaric (C) 5 mM +0.1 -0.7 -2.8 +0.1 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.8 -0.4 -1.0 -0.2 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.6 -0.9 -0.7 +0.0 -0.2
no stress control L-Glutamine (C)(N); with MOPS -0.7 -0.3 -1.3 -0.1 +0.1
no stress control L-Glutamine (C)(N); with TAPS -1.7 -0.2 -0.5 +0.2 +0.0
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.2 -1.9 -0.2 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS +0.3 -0.3 -1.5 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.5 -1.4 -0.1 +0.5
carbon source m-Inositol (C) -0.2 -0.4 -2.0 +0.3 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -0.7 -1.1 -0.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.6 -0.4 +0.2 -0.2 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.1 -1.0 -1.1 +0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 +0.6 -1.2 -0.3 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 -0.0 -2.0 -0.3 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.8 +0.8 -0.0 -0.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.2 +0.3 -0.9 +0.2 +0.2
carbon source Inosine (C) -1.5 +0.1 +0.4 -0.4 -0.0
carbon source octanoate 10 mM (C) +0.2 +0.3 -1.8 +0.0 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.3 +0.6 -1.5 -0.2 -0.5
carbon source L-Carnitine (C) +0.3 +0.5 -1.5 -0.3 -0.2
carbon source Xanthosine (C) +0.8 -0.3 -1.9 +0.2 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.9 -0.6 -0.8 -0.2 -0.4
carbon source L-Arabinose (C); with MOPS +0.8 -0.7 -0.8 -0.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 +0.1 -1.2 -0.0 -0.4
carbon source L-Valine (C) -0.2 -0.4 +1.4 -0.4 +0.2
pH Growth at pH9 and (C) Trisodium citrate +1.1 -0.2 +1.4 -0.5 -0.1
nitrogen source nitrate (N); with MOPS +1.0 -0.2 +0.9 +0.1 +0.5
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