Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15980 and PFLU_RS15985 overlap by 8 nucleotidesPFLU_RS15985 and PFLU_RS15990 overlap by 8 nucleotidesPFLU_RS15990 and PFLU_RS31665 are separated by 400 nucleotidesPFLU_RS31665 and PFLU_RS15995 are separated by 33 nucleotides PFLU_RS15980: PFLU_RS15980 - molybdenum cofactor biosynthesis protein F, at 3,629,708 to 3,630,529 _RS15980 PFLU_RS15985: PFLU_RS15985 - SDR family oxidoreductase, at 3,630,522 to 3,631,322 _RS15985 PFLU_RS15990: PFLU_RS15990 - SDR family oxidoreductase, at 3,631,315 to 3,632,085 _RS15990 PFLU_RS31665: PFLU_RS31665 - hypothetical protein, at 3,632,486 to 3,632,674 _RS31665 PFLU_RS15995: PFLU_RS15995 - TetR/AcrR family transcriptional regulator, at 3,632,708 to 3,633,292 _RS15995
Group Condition PFLU_RS15980 PFLU_RS15985 PFLU_RS15990 PFLU_RS31665 PFLU_RS15995
carbon source Xanthosine (C) +0.1 -1.4 -3.8 N.D. +0.6
carbon source acetate 30 mM (C) +0.3 +0.1 -3.9 N.D. -0.6
carbon source NAG (C) -0.7 +0.3 -1.2 N.D. -2.4
carbon source Choline chloride 10 mM (C) +0.4 +0.3 -4.8 N.D. +0.2
pH Growth at pH9 and (C) D-Glucose -0.2 -1.0 -1.7 N.D. -0.8
pH Growth at pH9 and (C) Trisodium citrate -0.3 +0.1 -3.5 N.D. -0.0
carbon source propionate 20 mM (C) -0.1 -1.4 -2.0 N.D. -0.0
pH Growth at pH9 and (C) Trisodium citrate -0.6 -1.6 -1.5 N.D. +0.1
carbon source Inosine (C) -0.0 -0.0 -2.7 N.D. -0.7
no stress control Glucose (C) and nitrate (N); with TAPS -0.6 -0.0 -3.0 N.D. +0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.1 -0.1 -3.5 N.D. +0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.1 +0.1 -3.8 N.D. +0.3
carbon source p-Coumaric 2 mM (C) +0.6 -0.3 -3.7 N.D. +0.2
carbon source 4-Guanidinobutyric (C) -0.3 -1.0 -1.8 N.D. -0.1
carbon source Xanthosine (C) -0.7 -1.6 -1.1 N.D. +0.4
nitrogen source nitrate (N); with MOPS -0.1 +0.2 -3.1 N.D. -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 -0.2 -2.8 N.D. -0.1
carbon source succinate (C); with MOPS +0.0 +0.4 -3.1 N.D. -0.3
stress Sucrose (C) and L-Glutamine (N); with MOPS; with PEG +0.1 +0.1 -3.4 N.D. +0.7
no stress control Glycine betaine (C)(N); with TAPS +0.2 +0.4 -4.0 N.D. +0.9
pH Growth at pH8 and (C) Trisodium citrate +0.4 -0.3 -2.3 N.D. -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.0 +0.7 -2.1 N.D. -0.8
carbon source L-Valine (C) +0.4 +0.1 -3.1 N.D. +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.4 -2.5 N.D. +0.4
carbon source Shikimic Acid (C) -0.7 -1.6 +1.3 N.D. +0.0
no stress control Glycine betaine (C)(N); with MOPS +0.0 +1.4 -1.6 N.D. -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.3 +1.5 N.D. -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -1.1 +1.5 N.D. -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.0 -0.1 -1.5 N.D. +1.0
carbon source Shikimic Acid (C) +0.6 +0.1 +2.2 N.D. +0.2
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