Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15960 and PFLU_RS15965 are separated by 237 nucleotidesPFLU_RS15965 and PFLU_RS15970 are separated by 31 nucleotidesPFLU_RS15970 and PFLU_RS15975 are separated by 57 nucleotidesPFLU_RS15975 and PFLU_RS15980 are separated by 85 nucleotides PFLU_RS15960: PFLU_RS15960 - homoprotocatechuate degradation operon regulator HpaR, at 3,626,550 to 3,626,972 _RS15960 PFLU_RS15965: PFLU_RS15965 - FAD-binding oxidoreductase, at 3,627,210 to 3,628,508 _RS15965 PFLU_RS15970: PFLU_RS15970 - DUF861 domain-containing protein, at 3,628,540 to 3,628,905 _RS15970 PFLU_RS15975: PFLU_RS15975 - LuxR family transcriptional regulator, at 3,628,963 to 3,629,622 _RS15975 PFLU_RS15980: PFLU_RS15980 - molybdenum cofactor biosynthesis protein F, at 3,629,708 to 3,630,529 _RS15980
Group Condition PFLU_RS15960 PFLU_RS15965 PFLU_RS15970 PFLU_RS15975 PFLU_RS15980
carbon source Phloretic Acid 2 mM (C) N.D. -0.0 -3.9 +0.2 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.1 -4.1 +0.3 +0.1
carbon source 4-Aminobutyric (C) N.D. -0.3 -2.0 -0.7 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.7 -1.4 -0.6 +0.1
carbon source L-Valine (C) N.D. +0.8 -2.4 -1.4 +0.4
carbon source 4-Aminobutyric (C) N.D. -1.1 -0.9 -0.6 +0.3
carbon source m-Inositol (C) N.D. +0.0 -1.4 -1.0 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. -0.3 -1.4 -0.4 -0.1
carbon source D-Glucuronic (C) N.D. -0.6 -1.6 -0.0 -0.1
carbon source L-Carnitine (C) N.D. -0.2 -0.9 -0.3 -0.9
temperature shift Temperature shift 30_to_25; with MOPS N.D. +0.1 -0.9 -1.0 -0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. -0.3 -1.8 +0.3 -0.1
stress Betaine (C)(N); with TAPS; with chloride N.D. +0.0 -1.6 -0.6 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.3 -1.5 +0.6 -0.6
no stress control Glycine betaine (C)(N); with TAPS N.D. -0.6 -0.3 -1.1 +0.2
carbon source NAG (C) N.D. -0.2 -1.3 -0.5 +0.3
stress Growth with Chloride 200 mM N.D. -0.1 -1.4 +0.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.5 -1.3 +0.0 +0.3
carbon source Xanthosine (C) N.D. -1.1 -0.5 +0.4 +0.1
carbon source Xanthosine (C) N.D. -0.1 +0.8 -1.0 -0.7
stress L-Glutamine (C)(N); with MOPS; with chloride N.D. +0.7 -1.0 -0.2 -0.3
pH Growth at pH8 and (C) Trisodium citrate N.D. +0.3 -2.1 +0.5 +0.4
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.3 -0.7 +1.1 -0.6
temperature shift Temperature shift 10_to_25; with MOPS N.D. +0.2 -1.2 +0.8 -0.2
temperature Growth at 25C N.D. +0.2 +0.8 -0.5 -0.9
stress Betaine (C)(N); with TAPS; with chloride N.D. -0.7 +1.5 -0.2 -0.4
no stress control Glucose (C) and L-Glutamine (N); with TAPS N.D. -0.4 +1.4 -0.6 -0.0
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.5 +1.3 +0.2 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.1 +2.0 +0.0 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.6 +1.3 +0.4 +1.0
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