Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15775 and PFLU_RS15780 are separated by 6 nucleotidesPFLU_RS15780 and PFLU_RS15785 are separated by 81 nucleotidesPFLU_RS15785 and PFLU_RS15790 overlap by 4 nucleotidesPFLU_RS15790 and PFLU_RS15795 are separated by 390 nucleotides PFLU_RS15775: PFLU_RS15775 - type II secretion system protein GspI, at 3,578,794 to 3,579,180 _RS15775 PFLU_RS15780: PFLU_RS15780 - general secretion pathway protein GspC, at 3,579,187 to 3,579,618 _RS15780 PFLU_RS15785: PFLU_RS15785 - type II secretion system protein GspH, at 3,579,700 to 3,580,161 _RS15785 PFLU_RS15790: PFLU_RS15790 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 3,580,158 to 3,580,769 _RS15790 PFLU_RS15795: PFLU_RS15795 - hypothetical protein, at 3,581,160 to 3,581,558 _RS15795
Group Condition PFLU_RS15775 PFLU_RS15780 PFLU_RS15785 PFLU_RS15790 PFLU_RS15795
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. N.D. -0.8 -1.8 -2.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. -3.3 -0.6 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -1.6 -1.1 -2.1
no stress control Glycine betaine (C)(N); with MOPS N.D. N.D. +0.3 -1.5 -3.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. -1.1 -0.8 -2.7
carbon source L-Carnitine (C) N.D. N.D. -1.8 +0.6 -3.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -2.4 -0.0 -1.5
carbon source caffeic 2 mM (C) N.D. N.D. -0.0 -0.0 -3.7
pH Growth at pH7 and (C) D-Glucose N.D. N.D. -1.6 +0.0 -2.2
carbon source L-Ornithine 10 mM (C) N.D. N.D. +0.6 -1.8 -2.2
carbon source L-Valine 10 mM (C) N.D. N.D. +0.3 -0.6 -3.0
pH Growth at pH9 and (C) D-Glucose N.D. N.D. -2.4 +0.5 -1.4
carbon source 4-Guanidinobutyric (C) N.D. N.D. -1.3 +0.4 -2.4
carbon source Phloretic Acid 2 mM (C) N.D. N.D. +0.8 -1.0 -2.9
carbon source L-Isoleucine (C) N.D. N.D. +0.6 -0.2 -3.4
carbon source D-Trehalose (C) N.D. N.D. +0.8 -0.0 -3.4
carbon source Fumarate (C) N.D. N.D. -0.5 +0.6 -2.7
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. -0.3 +0.5 -2.7
carbon source Inosine (C) N.D. N.D. -0.9 +0.5 -2.1
stress Betaine (C)(N); with MOPS; with chloride N.D. N.D. +0.8 -0.8 -2.2
carbon source L-Lysine (C) N.D. N.D. +0.8 -0.7 -2.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. +0.9 -0.0 -2.7
carbon source D-Mannitol (C) N.D. N.D. +0.4 +0.7 -2.9
carbon source m-Inositol (C) N.D. N.D. -0.6 +1.1 -1.9
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. N.D. +0.8 +0.2 -2.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. N.D. +1.8 -0.1 -2.7
carbon source 4-Aminobutyric (C) N.D. N.D. +0.1 +1.4 -2.5
carbon source Xanthosine (C) N.D. N.D. +1.4 -2.1 -0.1
carbon source NAG (C) N.D. N.D. +0.8 +0.6 -2.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. +1.5 +0.2 -2.3
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