Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15760 and PFLU_RS15765 overlap by 4 nucleotidesPFLU_RS15765 and PFLU_RS15770 are separated by 47 nucleotidesPFLU_RS15770 and PFLU_RS15775 are separated by 146 nucleotidesPFLU_RS15775 and PFLU_RS15780 are separated by 6 nucleotides PFLU_RS15760: PFLU_RS15760 - general secretion pathway protein GspL, at 3,576,055 to 3,577,227 _RS15760 PFLU_RS15765: PFLU_RS15765 - general secretion pathway protein GspK, at 3,577,224 to 3,578,150 _RS15765 PFLU_RS15770: PFLU_RS15770 - type II secretion system protein GspG, at 3,578,198 to 3,578,647 _RS15770 PFLU_RS15775: PFLU_RS15775 - type II secretion system protein GspI, at 3,578,794 to 3,579,180 _RS15775 PFLU_RS15780: PFLU_RS15780 - general secretion pathway protein GspC, at 3,579,187 to 3,579,618 _RS15780
Group Condition PFLU_RS15760 PFLU_RS15765 PFLU_RS15770 PFLU_RS15775 PFLU_RS15780
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.9 -1.1 -0.6 N.D. N.D.
carbon source Inosine (C) -0.9 -0.8 -0.7 N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.7 -0.3 N.D. N.D.
carbon source Inosine 10 mM (C) -1.4 -0.6 +0.0 N.D. N.D.
carbon source NAG (C) -0.6 -1.3 -0.1 N.D. N.D.
carbon source L-Lactate (C) -0.8 -0.6 -0.5 N.D. N.D.
stress malate (C) and Ammonium chloride (N); with TAPS -0.9 -1.1 +0.0 N.D. N.D.
stress Glucose (C) and Betaine (N); with TAPS; with chloride -1.3 -1.1 +0.4 N.D. N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.4 -1.2 -0.2 N.D. N.D.
carbon source Inosine (C) -0.6 -1.3 +0.2 N.D. N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 -1.9 -0.2 N.D. N.D.
nitrogen source NAG (N); with MOPS +0.4 -2.4 +0.6 N.D. N.D.
carbon source L-Arabinose (C); with MOPS +0.2 -1.6 +0.2 N.D. N.D.
stress Betaine (C)(N); with MOPS; with chloride -1.4 +0.9 -0.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 -1.2 -0.7 N.D. N.D.
stress Betaine (C)(N); with MOPS; with chloride -1.1 +0.4 -0.4 N.D. N.D.
carbon source Phloretic Acid 2 mM (C) +0.4 -0.9 -0.6 N.D. N.D.
no stress control Betaine (C)(N); with TAPS -1.4 -0.0 +0.5 N.D. N.D.
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -1.2 -0.1 +0.5 N.D. N.D.
carbon source 4-Aminobutyric (C) +0.9 -0.4 -1.2 N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.9 -1.3 N.D. N.D.
stress Betaine (C)(N); with TAPS; with chloride +0.4 -1.5 +0.7 N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 -1.5 +1.2 N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.8 -1.1 +0.2 N.D. N.D.
carbon source D-Trehalose (C) +0.7 -1.0 +0.4 N.D. N.D.
stress Betaine (C)(N); with TAPS; with chloride +0.6 -1.0 +0.8 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.0 -1.1 +0.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +0.9 -0.6 N.D. N.D.
carbon source L-Isoleucine (C) +0.5 +1.0 +0.3 N.D. N.D.
carbon source p-Coumaric 2 mM (C) +0.9 +0.9 +0.3 N.D. N.D.
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