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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS15745 and PFLU_RS15750 overlap by 4 nucleotides
PFLU_RS15750 and PFLU_RS15755 overlap by 4 nucleotides
PFLU_RS15755 and PFLU_RS15760 overlap by 8 nucleotides
PFLU_RS15760 and PFLU_RS15765 overlap by 4 nucleotides
PFLU_RS15745: PFLU_RS15745 - type II secretion system ATPase GspE, at 3,571,739 to 3,573,157
_RS15745
PFLU_RS15750: PFLU_RS15750 - type II secretion system secretin GspD, at 3,573,154 to 3,575,520
_RS15750
PFLU_RS15755: PFLU_RS15755 - type II secretion system protein M, at 3,575,517 to 3,576,062
_RS15755
PFLU_RS15760: PFLU_RS15760 - general secretion pathway protein GspL, at 3,576,055 to 3,577,227
_RS15760
PFLU_RS15765: PFLU_RS15765 - general secretion pathway protein GspK, at 3,577,224 to 3,578,150
_RS15765
Group
Condition
PFLU
_RS15745
PFLU
_RS15750
PFLU
_RS15755
PFLU
_RS15760
PFLU
_RS15765
stress
Betaine (C)(N); with TAPS; with chloride
-3.6
+0.4
-1.9
-1.2
+0.1
stress
Glucose (C) and L-Glutamine (N); with MOPS; with chloride
-1.9
-0.1
-2.2
+0.3
-0.2
carbon source
Inosine (C)
-1.4
+0.5
-1.2
-0.6
-1.3
carbon source
m-Inositol (C)
+0.4
+0.1
-3.4
-0.4
-0.5
nitrogen source
NAG (N); with MOPS
-0.7
+0.2
-1.2
+0.4
-2.4
carbon source
4-Hydroxybenzoic Acid 2 mM (C)
-1.7
-0.0
-1.3
-0.4
+0.1
carbon source
L-Ornithine 10 mM (C)
-1.2
+0.2
-1.1
-0.9
-0.4
stress
Betaine (C)(N); with TAPS; with chloride
+0.2
+0.1
-2.5
+0.4
-1.5
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
-2.5
-0.3
-0.1
+0.2
-0.5
carbon source
Inosine 10 mM (C)
-0.5
+0.4
-0.8
-1.4
-0.6
pH
Growth at pH6 and (C) Trisodium citrate
-1.7
+0.2
-0.4
-1.2
+0.3
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.8
+0.4
-0.7
-1.0
-0.7
carbon source
D-(+)-Galactosamine 10 mM (C)
-0.5
-0.0
-2.7
+0.1
+0.3
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
-1.3
+0.5
-1.6
-0.3
+0.3
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
+0.3
+0.6
-4.5
+0.6
+0.7
stress
Betaine (C)(N); with MOPS; with chloride
+0.6
-0.1
-2.0
-1.1
+0.4
no stress control
Glucose (C) and Betaine (N); with MOPS
+0.4
+0.2
-1.8
-1.2
+0.3
carbon source
D-(+)-Galactosamine (C)
+0.1
-0.0
-2.5
+0.7
-0.4
carbon source
D-Galactose (C)
-0.2
+0.1
-2.5
+0.4
+0.3
carbon source
p-Coumaric 2 mM (C)
+0.4
-0.1
-2.5
+0.8
-0.5
carbon source
4-Acetoxy-3-methoxycinnamic 2 mM (C)
+0.7
+0.1
-2.9
-0.1
+0.5
no stress control
D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS
-0.3
+0.2
+1.0
-0.9
-1.1
soil
Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
+0.8
+0.4
-2.2
+1.0
-1.1
carbon source
Phloretic Acid 2 mM (C)
+1.0
-0.2
-1.3
+0.4
-0.9
carbon source
Shikimic Acid (C)
-1.7
-0.6
+1.0
-0.0
+0.3
carbon source
L-Lysine (C)
+0.8
+0.4
-2.1
-0.6
+0.7
no stress control
Glycine betaine (C)(N); with MOPS
-1.5
+0.0
-0.8
+0.7
+0.9
carbon source
Phloretic Acid 2 mM (C)
+1.7
+0.2
-1.5
+0.3
-0.1
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+1.0
+0.1
+1.0
+0.0
-1.5
stress
Betaine (C)(N); with MOPS; with chloride
-0.3
+0.1
+1.3
-1.4
+0.9
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