Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15745 and PFLU_RS15750 overlap by 4 nucleotidesPFLU_RS15750 and PFLU_RS15755 overlap by 4 nucleotidesPFLU_RS15755 and PFLU_RS15760 overlap by 8 nucleotidesPFLU_RS15760 and PFLU_RS15765 overlap by 4 nucleotides PFLU_RS15745: PFLU_RS15745 - type II secretion system ATPase GspE, at 3,571,739 to 3,573,157 _RS15745 PFLU_RS15750: PFLU_RS15750 - type II secretion system secretin GspD, at 3,573,154 to 3,575,520 _RS15750 PFLU_RS15755: PFLU_RS15755 - type II secretion system protein M, at 3,575,517 to 3,576,062 _RS15755 PFLU_RS15760: PFLU_RS15760 - general secretion pathway protein GspL, at 3,576,055 to 3,577,227 _RS15760 PFLU_RS15765: PFLU_RS15765 - general secretion pathway protein GspK, at 3,577,224 to 3,578,150 _RS15765
Group Condition PFLU_RS15745 PFLU_RS15750 PFLU_RS15755 PFLU_RS15760 PFLU_RS15765
stress Betaine (C)(N); with TAPS; with chloride -3.6 +0.4 -1.9 -1.2 +0.1
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -1.9 -0.1 -2.2 +0.3 -0.2
carbon source Inosine (C) -1.4 +0.5 -1.2 -0.6 -1.3
carbon source m-Inositol (C) +0.4 +0.1 -3.4 -0.4 -0.5
nitrogen source NAG (N); with MOPS -0.7 +0.2 -1.2 +0.4 -2.4
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -1.7 -0.0 -1.3 -0.4 +0.1
carbon source L-Ornithine 10 mM (C) -1.2 +0.2 -1.1 -0.9 -0.4
stress Betaine (C)(N); with TAPS; with chloride +0.2 +0.1 -2.5 +0.4 -1.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.5 -0.3 -0.1 +0.2 -0.5
carbon source Inosine 10 mM (C) -0.5 +0.4 -0.8 -1.4 -0.6
pH Growth at pH6 and (C) Trisodium citrate -1.7 +0.2 -0.4 -1.2 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.8 +0.4 -0.7 -1.0 -0.7
carbon source D-(+)-Galactosamine 10 mM (C) -0.5 -0.0 -2.7 +0.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 +0.5 -1.6 -0.3 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.6 -4.5 +0.6 +0.7
stress Betaine (C)(N); with MOPS; with chloride +0.6 -0.1 -2.0 -1.1 +0.4
no stress control Glucose (C) and Betaine (N); with MOPS +0.4 +0.2 -1.8 -1.2 +0.3
carbon source D-(+)-Galactosamine (C) +0.1 -0.0 -2.5 +0.7 -0.4
carbon source D-Galactose (C) -0.2 +0.1 -2.5 +0.4 +0.3
carbon source p-Coumaric 2 mM (C) +0.4 -0.1 -2.5 +0.8 -0.5
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.7 +0.1 -2.9 -0.1 +0.5
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.3 +0.2 +1.0 -0.9 -1.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.8 +0.4 -2.2 +1.0 -1.1
carbon source Phloretic Acid 2 mM (C) +1.0 -0.2 -1.3 +0.4 -0.9
carbon source Shikimic Acid (C) -1.7 -0.6 +1.0 -0.0 +0.3
carbon source L-Lysine (C) +0.8 +0.4 -2.1 -0.6 +0.7
no stress control Glycine betaine (C)(N); with MOPS -1.5 +0.0 -0.8 +0.7 +0.9
carbon source Phloretic Acid 2 mM (C) +1.7 +0.2 -1.5 +0.3 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +1.0 +0.1 +1.0 +0.0 -1.5
stress Betaine (C)(N); with MOPS; with chloride -0.3 +0.1 +1.3 -1.4 +0.9
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