Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15720 and PFLU_RS15725 overlap by 10 nucleotidesPFLU_RS15725 and PFLU_RS15730 are separated by 226 nucleotidesPFLU_RS15730 and PFLU_RS31645 are separated by 72 nucleotidesPFLU_RS31645 and PFLU_RS15735 are separated by 651 nucleotides PFLU_RS15720: PFLU_RS15720 - cyclic peptide export ABC transporter, at 3,564,103 to 3,565,734 _RS15720 PFLU_RS15725: PFLU_RS15725 - siderophore-iron reductase FhuF, at 3,565,725 to 3,566,381 _RS15725 PFLU_RS15730: PFLU_RS15730 - ABC transporter ATP-binding protein/permease, at 3,566,608 to 3,568,311 _RS15730 PFLU_RS31645: PFLU_RS31645 - hypothetical protein, at 3,568,384 to 3,568,671 _RS31645 PFLU_RS15735: PFLU_RS15735 - pectate lyase, at 3,569,323 to 3,570,465 _RS15735
Group Condition PFLU_RS15720 PFLU_RS15725 PFLU_RS15730 PFLU_RS31645 PFLU_RS15735
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.2 -1.7 -0.9 -1.7 +0.2
carbon source Xanthosine (C) -0.4 +0.4 -0.4 -3.3 -0.0
pH Growth at pH8 and (C) Trisodium citrate -0.3 -0.7 -0.8 -1.7 -0.1
carbon source Shikimic Acid (C) -0.9 -0.1 -0.2 -2.1 -0.2
carbon source Shikimic Acid (C) -0.0 -1.1 -0.3 -1.3 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -0.1 -1.4 -1.0 -0.3
pH Growth at pH9 and (C) Trisodium citrate -0.0 +0.4 +0.2 -2.8 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -1.7 -0.1 -0.7 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 +0.0 -1.0 -1.3 -0.5
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 +0.5 -0.1 -2.5 -0.4
no stress control L-Glutamine (C)(N); with MOPS -0.3 -0.8 -0.4 -1.1 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.9 -1.3 +0.4 -0.3
carbon source 4-Guanidinobutyric (C) -0.1 -0.6 +0.3 -1.4 -0.4
carbon source L-Ornithine 10 mM (C) +0.1 +0.3 -0.4 -2.1 +0.1
stress Sucrose (C) and L-Glutamine (N); with TAPS; with PEG -1.4 -0.7 -0.1 +0.2 +0.0
carbon source 4-Aminobutyric (C) -0.4 -0.9 -0.7 +0.5 -0.5
pH Growth at pH7 and (C) D-Glucose +0.4 +0.2 -1.7 -0.8 +0.1
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.5 -1.0 -0.9 +0.6 +0.1
stress Betaine (C)(N); with TAPS; with chloride -0.4 +0.4 -1.0 -0.8 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 -0.6 +0.1 -1.0 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.5 +0.6 -2.0 +0.1
no stress control L-Glutamine (C)(N); with TAPS +0.3 -1.3 +0.3 +0.1 -0.6
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.2 +0.3 +0.3 -1.9 +0.0
carbon source Xanthosine (C) -0.4 +0.5 +0.4 -1.3 +0.3
carbon source caffeic 2 mM (C) +0.7 -0.8 +0.2 -0.8 +0.3
no stress control Glycine betaine (C)(N); with TAPS -1.1 -0.3 +0.0 +1.0 +0.1
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -0.6 +0.4 +0.2 +0.8
stress Betaine (C)(N); with MOPS; with chloride +0.1 +0.7 -0.2 +0.7 -0.9
carbon source Inosine (C) +0.1 -0.6 +0.6 +1.1 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.3 +0.2 +1.3 +0.4
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