Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15665 and PFLU_RS15670 are separated by 1 nucleotidesPFLU_RS15670 and PFLU_RS15675 are separated by 64 nucleotidesPFLU_RS15675 and PFLU_RS15680 are separated by 117 nucleotidesPFLU_RS15680 and PFLU_RS15685 are separated by 256 nucleotides PFLU_RS15665: PFLU_RS15665 - multidrug efflux RND transporter permease subunit, at 3,519,650 to 3,522,760 _RS15665 PFLU_RS15670: PFLU_RS15670 - efflux RND transporter periplasmic adaptor subunit, at 3,522,762 to 3,523,901 _RS15670 PFLU_RS15675: PFLU_RS15675 - diaminobutyrate--2-oxoglutarate transaminase family protein, at 3,523,966 to 3,525,381 _RS15675 PFLU_RS15680: PFLU_RS15680 - TonB-dependent receptor, at 3,525,499 to 3,527,559 _RS15680 PFLU_RS15685: PFLU_RS15685 - TauD/TfdA family dioxygenase, at 3,527,816 to 3,528,793 _RS15685
Group Condition PFLU_RS15665 PFLU_RS15670 PFLU_RS15675 PFLU_RS15680 PFLU_RS15685
carbon source octanoate 10 mM (C) -0.1 +0.0 +0.1 -1.9 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.1 -0.3 -1.1 -0.6
stress malate (C) and Ammonium chloride (N); with TAPS -0.1 +0.0 +0.0 -2.0 +0.1
no stress control malate (C) and Ammonium chloride (N); with TAPS +0.1 +0.1 -0.4 -1.6 +0.0
stress malate (C) and Ammonium chloride (N); with TAPS -0.2 -0.0 +0.1 -1.5 -0.1
carbon source octanoate 10 mM (C) +0.2 +0.2 -0.2 -1.9 +0.2
no stress control malate (C) and Ammonium chloride (N); with TAPS -0.0 +0.2 -0.1 -1.5 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.1 +0.6 -1.8 -0.1
carbon source acetate 30 mM (C) +0.1 -0.0 -0.5 -1.3 +0.1
stress malate (C) and Ammonium chloride (N); with MOPS -0.1 +0.1 -0.3 -1.3 +0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.1 +0.1 +0.0 -1.6 +0.2
stress malate (C) and Ammonium chloride (N); with TAPS +0.0 -0.0 -0.1 -1.5 +0.2
stress malate (C) and Ammonium chloride (N); with MOPS -0.0 -0.0 -0.1 -1.5 +0.2
stress malate (C) and Ammonium chloride (N); with TAPS +0.1 +0.0 -0.1 -1.6 +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +0.0 +0.1 +0.0 -1.7 +0.3
no stress control malate (C) and Ammonium chloride (N); with TAPS +0.0 +0.2 -0.1 -1.5 +0.0
stress malate (C) and Ammonium chloride (N); with MOPS -0.0 +0.2 -0.1 -1.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.2 -0.1 -1.1 +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +0.0 +0.1 +0.2 -1.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -1.0 -0.3 -0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.5 +0.2 -1.2 +0.3
stress malate (C) and Ammonium chloride (N); with TAPS +0.1 +0.1 +0.1 -1.3 +0.2
carbon source acetate (C) -0.2 -0.4 -0.4 -0.2 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.4 +0.5 -0.8 -0.0
carbon source Shikimic Acid (C) -0.7 +0.2 +0.5 -0.7 +0.3
stress Glucose (C) and L-Glutamine (N); with TAPS; with chloride +0.3 +0.1 -0.0 -1.1 +0.3
nitrogen source NAG (N); with MOPS -0.1 -0.6 +0.5 -0.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.1 +0.6 -0.8 +0.1
carbon source L-Valine (C) +0.3 -0.3 +0.2 +0.3 +0.7
pH Growth at pH9 and (C) Trisodium citrate +0.2 +0.3 +0.6 -0.1 +0.8
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