Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15660 and PFLU_RS15665 are separated by 34 nucleotidesPFLU_RS15665 and PFLU_RS15670 are separated by 1 nucleotidesPFLU_RS15670 and PFLU_RS15675 are separated by 64 nucleotidesPFLU_RS15675 and PFLU_RS15680 are separated by 117 nucleotides PFLU_RS15660: PFLU_RS15660 - helix-turn-helix transcriptional regulator, at 3,519,040 to 3,519,615 _RS15660 PFLU_RS15665: PFLU_RS15665 - multidrug efflux RND transporter permease subunit, at 3,519,650 to 3,522,760 _RS15665 PFLU_RS15670: PFLU_RS15670 - efflux RND transporter periplasmic adaptor subunit, at 3,522,762 to 3,523,901 _RS15670 PFLU_RS15675: PFLU_RS15675 - diaminobutyrate--2-oxoglutarate transaminase family protein, at 3,523,966 to 3,525,381 _RS15675 PFLU_RS15680: PFLU_RS15680 - TonB-dependent receptor, at 3,525,499 to 3,527,559 _RS15680
Group Condition PFLU_RS15660 PFLU_RS15665 PFLU_RS15670 PFLU_RS15675 PFLU_RS15680
temperature Growth at 25C -1.2 -0.3 -0.6 -0.2 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.6 +0.1 +0.1 -0.0 -1.0
carbon source Xanthosine (C) -0.8 -0.1 -0.4 -0.3 -0.5
stress malate (C) and Ammonium chloride (N); with TAPS +0.1 -0.1 +0.0 +0.0 -2.0
carbon source acetate 30 mM (C) -0.3 +0.1 -0.0 -0.5 -1.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 +0.2 -0.2 -0.1 -1.1
carbon source octanoate 10 mM (C) -0.3 +0.0 -0.0 +0.0 -1.6
carbon source octanoate 10 mM (C) -0.1 +0.2 +0.2 -0.2 -1.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.1 -0.1 +0.6 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +0.4 -1.0 -0.3 -0.1
stress malate (C) and Ammonium chloride (N); with TAPS -0.2 +0.0 +0.1 +0.0 -1.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 +0.0 +0.2 +0.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 +0.3 -0.3 +0.0 -0.9
no stress control malate (C) and Ammonium chloride (N); with TAPS +0.2 +0.1 +0.1 -0.4 -1.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.4 +0.0 -0.1 +0.3 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.3 -0.5 +0.2 -1.2
carbon source octanoate 10 mM (C) +0.4 -0.1 +0.0 +0.1 -1.9
stress malate (C) and Ammonium chloride (N); with TAPS -0.5 -0.2 -0.0 +0.3 -1.1
carbon source caffeic 2 mM (C) -0.9 -0.0 -0.2 +0.3 -0.5
no stress control malate (C) and Ammonium chloride (N); with TAPS +0.1 -0.0 +0.2 -0.1 -1.5
stress malate (C) and Ammonium chloride (N); with TAPS -0.6 -0.0 -0.0 +0.3 -1.0
stress malate (C) and Ammonium chloride (N); with TAPS +0.3 -0.2 -0.0 +0.1 -1.5
stress malate (C) and Ammonium chloride (N); with MOPS +0.4 -0.0 -0.0 -0.1 -1.5
stress malate (C) and Ammonium chloride (N); with MOPS +0.4 -0.0 +0.1 -0.1 -1.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 +0.1 -0.4 +0.5 -0.8
carbon source Shikimic Acid (C) -0.3 -0.7 +0.2 +0.5 -0.7
no stress control malate (C) and Ammonium chloride (N); with TAPS +0.3 +0.0 +0.2 -0.1 -1.5
stress malate (C) and Ammonium chloride (N); with TAPS +0.3 +0.0 +0.1 +0.2 -1.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 +0.3 -0.1 +0.6 -0.8
carbon source 4-Guanidinobutyric (C) +0.7 +0.1 -0.6 +0.2 -0.5
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