Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15525 and PFLU_RS15530 are separated by 156 nucleotidesPFLU_RS15530 and PFLU_RS15535 are separated by 183 nucleotidesPFLU_RS15535 and PFLU_RS15540 are separated by 112 nucleotidesPFLU_RS15540 and PFLU_RS30840 are separated by 163 nucleotides PFLU_RS15525: PFLU_RS15525 - helix-turn-helix transcriptional regulator, at 3,474,911 to 3,475,300 _RS15525 PFLU_RS15530: PFLU_RS15530 - gamma-glutamyltransferase, at 3,475,457 to 3,477,187 _RS15530 PFLU_RS15535: PFLU_RS15535 - cation:dicarboxylase symporter family transporter, at 3,477,371 to 3,478,630 _RS15535 PFLU_RS15540: PFLU_RS15540 - glyoxalase, at 3,478,743 to 3,479,168 _RS15540 PFLU_RS30840: PFLU_RS30840 - hypothetical protein, at 3,479,332 to 3,479,541 _RS30840
Group Condition PFLU_RS15525 PFLU_RS15530 PFLU_RS15535 PFLU_RS15540 PFLU_RS30840
carbon source Phloretic Acid 2 mM (C) +0.1 -0.0 -0.2 -1.9 -2.3
carbon source propionate (C) +0.3 -0.3 -0.2 -0.4 -2.4
carbon source Shikimic Acid (C) -0.3 +0.2 -0.5 -0.7 -1.6
carbon source D-(+)-Galactosamine 10 mM (C) -0.3 +0.1 -0.2 -0.5 -1.9
carbon source Inosine 10 mM (C) -0.3 -0.1 +0.0 -0.5 -1.9
carbon source L-Valine 10 mM (C) -0.4 -0.0 -0.1 -0.6 -1.4
carbon source acetate (C) +0.5 -0.2 -0.1 -0.6 -1.8
no stress control L-Glutamine (C)(N); with MOPS -0.5 +0.2 -0.0 +0.4 -2.3
carbon source L-Valine (C) +1.1 +0.0 -0.2 -0.6 -2.4
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.0 -0.1 +0.3 -1.1 -1.2
carbon source L-Isoleucine (C) +0.3 -0.1 -0.4 -0.2 -1.5
carbon source NAG (C) -0.5 +0.2 -0.3 +0.4 -1.8
stress Betaine (C)(N); with MOPS; with chloride -0.0 -0.2 +0.2 -0.5 -1.3
carbon source L-Valine 10 mM (C) -0.3 +0.2 -0.3 +0.4 -1.7
no stress control L-Glutamine (C)(N); with TAPS -0.8 -0.1 +0.4 -1.0 -0.2
carbon source m-Inositol (C) +0.5 -0.0 -0.2 +0.1 -2.0
carbon source D-Xylose (C) +0.3 +0.2 -0.7 -0.4 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.0 -0.9 -0.1 -0.8 +0.6
no stress control L-Glutamine (C)(N); with TAPS -0.2 +0.2 +0.4 -0.0 -1.5
carbon source L-Valine (C) +0.6 +0.0 +0.1 -0.7 -1.0
carbon source L-Carnitine (C) -0.0 -0.6 +0.3 +0.6 -1.3
temperature Growth at 25C -0.0 +0.2 -0.5 +0.5 -1.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 -0.4 -0.1 +0.8 -1.4
carbon source L-Ornithine 10 mM (C) +0.0 -0.2 +0.3 +0.6 -1.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.3 -1.1 +0.8 +0.2
pH Growth at pH8 and (C) Trisodium citrate -0.8 +0.2 -0.4 -0.1 +1.7
carbon source p-Coumaric (C) 5 mM -0.7 -0.2 -0.2 -0.2 +2.4
carbon source p-Coumaric (C) 5 mM -0.1 -0.4 -0.1 -0.0 +1.9
carbon source p-Coumaric (C) 5 mM -0.5 -0.0 +0.5 +0.2 +2.0
carbon source p-Coumaric (C) 5 mM -0.2 +0.2 +0.0 +0.4 +2.0
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