Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15440 and PFLU_RS15445 are separated by 44 nucleotidesPFLU_RS15445 and PFLU_RS15450 are separated by 56 nucleotidesPFLU_RS15450 and PFLU_RS15455 are separated by 307 nucleotidesPFLU_RS15455 and PFLU_RS15460 are separated by 68 nucleotides PFLU_RS15440: PFLU_RS15440 - nuclear transport factor 2 family protein, at 3,461,447 to 3,461,833 _RS15440 PFLU_RS15445: PFLU_RS15445 - SRPBCC family protein, at 3,461,878 to 3,462,327 _RS15445 PFLU_RS15450: PFLU_RS15450 - flavin reductase family protein, at 3,462,384 to 3,462,962 _RS15450 PFLU_RS15455: PFLU_RS15455 - SDR family oxidoreductase, at 3,463,270 to 3,464,013 _RS15455 PFLU_RS15460: PFLU_RS15460 - alkene reductase, at 3,464,082 to 3,465,185 _RS15460
Group Condition PFLU_RS15440 PFLU_RS15445 PFLU_RS15450 PFLU_RS15455 PFLU_RS15460
carbon source caffeic 2 mM (C) -0.8 -0.1 -0.1 -1.6 +0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -1.5 -0.4 -0.2 -0.1 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -2.5 -0.1 +0.1 -0.2 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.7 +0.2 -1.3 +0.4 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.1 +0.3 -1.0 -0.1 -0.2
pH Growth at pH8 and (C) Trisodium citrate +0.1 -0.5 -0.7 -0.9 +0.1
temperature shift Temperature shift 10_to_25; with MOPS -0.8 -0.1 -1.1 +0.4 -0.1
temperature Growth at 25C; with MOPS +0.3 +0.2 -0.9 -1.4 +0.1
carbon source Xanthosine (C) -1.0 +0.2 -0.3 -0.6 +0.2
stress Betaine (C)(N); with MOPS; with chloride -2.5 +0.1 +1.0 +0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.3 +0.4 -0.3 +0.4 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.9 +0.0 +0.6 +0.3
carbon source L-Lysine (C) -0.9 +0.5 -0.8 +0.2 +0.2
carbon source L-Valine 10 mM (C) -1.5 +0.3 +0.9 -0.4 +0.2
carbon source L-Valine (C) -0.7 +0.3 +0.6 -0.7 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.1 -0.2 -1.5 +0.1 -0.1
stress L-Glutamine (C)(N); with TAPS; with chloride -1.2 +0.7 +0.5 -0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 +0.7 -0.2 +0.4 -0.2
carbon and nitrogen source NAG carbon and (N) +1.1 -0.4 -0.6 -0.2 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -0.1 +0.8 -0.1 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 +0.1 -1.2 +0.8 -0.1
stress L-Glutamine (C)(N); with MOPS; with chloride -1.0 +0.2 +0.4 +0.5 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 -0.2 -0.9 +0.3 +0.4
carbon source D,L-Malic Acid (C) +0.8 +0.6 +0.1 -1.2 +0.2
no stress control Glycine betaine (C)(N); with MOPS +0.4 +0.1 -0.8 +0.8 +0.3
stress Betaine (C)(N); with TAPS; with chloride +0.6 +0.2 +0.9 -0.9 +0.0
stress Betaine (C)(N); with MOPS; with chloride -0.8 -0.2 +0.6 +1.0 +0.2
stress Betaine (C)(N); with TAPS; with chloride +1.3 +0.1 +0.4 -0.7 +0.5
stress Betaine (C)(N); with MOPS; with chloride -0.3 +0.5 +0.7 +0.6 +0.4
stress Betaine (C)(N); with MOPS; with chloride +1.3 +0.4 +0.2 +0.4 -0.2
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