Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS15245 and PFLU_RS15250 overlap by 4 nucleotidesPFLU_RS15250 and PFLU_RS15255 are separated by 382 nucleotidesPFLU_RS15255 and PFLU_RS15260 overlap by 16 nucleotidesPFLU_RS15260 and PFLU_RS15265 are separated by 9 nucleotides PFLU_RS15245: PFLU_RS15245 - response regulator, at 3,415,681 to 3,416,343 _RS15245 PFLU_RS15250: PFLU_RS15250 - HAMP domain-containing protein, at 3,416,340 to 3,417,707 _RS15250 PFLU_RS15255: PFLU_RS15255 - PAS domain-containing sensor histidine kinase, at 3,418,090 to 3,419,439 _RS15255 PFLU_RS15260: PFLU_RS15260 - response regulator, at 3,419,424 to 3,419,807 _RS15260 PFLU_RS15265: PFLU_RS15265 - EAL domain-containing response regulator, at 3,419,817 to 3,421,046 _RS15265
Group Condition PFLU_RS15245 PFLU_RS15250 PFLU_RS15255 PFLU_RS15260 PFLU_RS15265
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.8 -0.4 -0.4 -0.1 -1.0
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 -0.9 +0.1 -1.2 -1.2
stress L-Glutamine (C)(N); with MOPS; with chloride -0.3 -0.3 +0.3 -2.5 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -0.8 -0.4 +0.1 -0.8
carbon source L-Carnitine (C) -0.2 -1.0 +0.4 -1.2 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 -0.3 -0.3 -0.4 -1.2
temperature shift Temperature shift 10_to_25; with MOPS +0.3 -0.1 -0.0 -1.6 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +0.2 +0.3 -1.5 -0.4
carbon source Inosine (C) -0.9 -0.4 +0.2 -1.1 +0.5
carbon source Shikimic Acid (C) +0.1 -1.5 -0.0 +0.5 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.5 -0.1 +0.0 -1.9
stress Betaine (C)(N); with MOPS; with chloride +1.2 -0.1 -0.4 -1.1 -0.8
carbon source propionate 20 mM (C) -0.9 -0.6 +0.1 +0.8 -0.6
pH Growth at pH8 and (C) D-Glucose +0.5 -0.9 +0.2 -0.5 -0.4
carbon source Shikimic Acid (C) -0.8 -0.4 -0.0 -0.4 +0.6
carbon source L-Lysine (C) -0.3 -0.5 -0.5 -0.6 +0.9
no stress control L-Glutamine (C)(N); with MOPS -1.0 +0.1 -0.0 -0.9 +1.0
carbon and nitrogen source NAG carbon and (N) +0.5 -1.0 +0.1 +0.4 -0.7
carbon source p-Coumaric 2 mM (C) -1.0 -0.5 +0.2 +0.4 +0.3
carbon source 4-Aminobutyric (C) -0.1 +0.3 -0.4 +0.9 -0.8
temperature Growth at 25C +0.7 +0.2 +0.1 -0.5 -0.7
carbon source propionate (C) +0.4 +0.1 +0.2 +0.5 -1.1
carbon source L-Valine (C) -0.1 +0.0 -0.3 +1.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.0 -0.3 +0.4 +0.6 -1.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 -0.9 +0.0 +0.6 +1.0
stress Betaine (C)(N); with TAPS; with chloride +0.7 -0.3 -0.3 -0.5 +1.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -0.7 +0.1 +0.2 +1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.3 +0.2 +0.8 +0.5
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.1 +0.4 +0.7 +1.2
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.4 +0.3 +0.0 +1.0 +0.8
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